GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002112-TA|BGIBMGA002112-PA|undefined
         (140 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.1|  393|Caenorhabditis elegans Hypothetical ...    31   0.30 
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AL132952-11|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    27   4.9  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    27   6.5  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    27   6.5  
AF068708-5|AAK68200.1|  628|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF068708-4|AAC17755.1|  693|Caenorhabditis elegans Hypothetical ...    27   6.5  
AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.      27   6.5  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    26   8.6  

>AC084156-1|AAK68491.1|  393|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 393

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 40  PSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTPRGSPI 94
           P P  LQH    + SP LFH    KP   +RT     ESP   +A       SP+
Sbjct: 239 PPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRT-----ESPAALKAAAAAASQSPV 288


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 27  QTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTF-ATPQESPVLGRAL 85
           QTT   PY+  P   PV +         P +   K ++P ++  T+  T   SP      
Sbjct: 154 QTTGAYPYYPGPAGPPVPVSTGSYGLYGPTVTTEKPMEPSVNPETYTGTVAHSPSANPIT 213

Query: 86  CLTPRGSPIP----GRVSHLNEKFQDSL--TLNSDTDS 117
              P   P P     +VS  +  + DS   T +S+T+S
Sbjct: 214 TTIPYEPPNPYGGQTQVSPSSNSYPDSTVSTTSSNTES 251


>Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical
           protein F43C1.5 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 114 DTDSLVAKISAMFPTVSETHIKILLKK 140
           D D  +    AMFP++S +HI+ +L+K
Sbjct: 20  DFDRAMLDFQAMFPSLSNSHIEYVLRK 46


>Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical
           protein C01F6.1 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 32  SPYHVHPY-PSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESP--VLGRALCLT 88
           S +++HP+ PSP  L+   Q       + P    PH+ A  F    + P   L  + C  
Sbjct: 295 SLHYIHPHQPSPY-LEALLQTVPPLLAYLPNPQNPHIGALGFGAKVQVPGGALQLSHCFC 353

Query: 89  PRGSPIPGRVSHL 101
             G+P   RV  L
Sbjct: 354 LNGTPTDPRVEGL 366


>AL132952-11|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 30  HGSPYHVHPYPSPVRLQHAFQAQSSPKLFH 59
           HG P H  P P  +  QH  +  SSP+ FH
Sbjct: 298 HGHPAHHIPNPHQLHHQHR-RRYSSPRRFH 326


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 30  HGSPYHVHPYPSPVRLQHAFQAQSSPKLFH 59
           HG P H  P P  +  QH  +  SSP+ FH
Sbjct: 298 HGHPAHHIPNPHQLHHQHR-RRYSSPRRFH 326


>Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical
           protein F28D1.6 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 29  THGSPYHVHPYPSPVRL-QHAFQAQSSPKLFHPKGLKPHL 67
           THG+P+   PYP PV +    F   + P  F    LK H+
Sbjct: 191 THGNPFF--PYPRPVDIWDRLFVLAAFPICFFAVMLKAHM 228


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 7/41 (17%)

Query: 33  PYHVHPYPSPVRLQH--AFQAQSSPKLF--H---PKGLKPH 66
           P    P+PSPVR  H  A Q Q++P+    H   P+G+ PH
Sbjct: 177 PLQQVPHPSPVRGSHPAAQQVQNAPQRIPQHVPMPQGVAPH 217


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 7/41 (17%)

Query: 33  PYHVHPYPSPVRLQH--AFQAQSSPKLF--H---PKGLKPH 66
           P    P+PSPVR  H  A Q Q++P+    H   P+G+ PH
Sbjct: 177 PLQQVPHPSPVRGSHPAAQQVQNAPQRIPQHVPMPQGVAPH 217


>AF068708-5|AAK68200.1|  628|Caenorhabditis elegans Hypothetical
           protein C18G1.4b protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 85  LCLTPRGSPIPGRVSHLNEKFQDSLTLNSDTDSLVAK 121
           L LTP+   I   VSH+  +F+++  +  D +SLV K
Sbjct: 158 LLLTPQEESIEKAVSHIVARFEEASAVEDD-ESLVLK 193


>AF068708-4|AAC17755.1|  693|Caenorhabditis elegans Hypothetical
           protein C18G1.4a protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 85  LCLTPRGSPIPGRVSHLNEKFQDSLTLNSDTDSLVAK 121
           L LTP+   I   VSH+  +F+++  +  D +SLV K
Sbjct: 223 LLLTPQEESIEKAVSHIVARFEEASAVEDD-ESLVLK 258


>AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 85  LCLTPRGSPIPGRVSHLNEKFQDSLTLNSDTDSLVAK 121
           L LTP+   I   VSH+  +F+++  +  D +SLV K
Sbjct: 223 LLLTPQEESIEKAVSHIVARFEEASAVEDD-ESLVLK 258


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 59  HPKGLKPHLDARTFATPQESPVLGRALCL 87
           H K +K HL++     PQE    G + CL
Sbjct: 456 HLKNVKSHLNSLRLGVPQEISPFGPSCCL 484


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,276
Number of Sequences: 27539
Number of extensions: 152213
Number of successful extensions: 338
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 16
length of query: 140
length of database: 12,573,161
effective HSP length: 75
effective length of query: 65
effective length of database: 10,507,736
effective search space: 683002840
effective search space used: 683002840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)