GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002112-TA|BGIBMGA002112-PA|undefined
         (140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.30 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   8.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 26  EQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQES 78
           E   H   +  HP+  P + QH  QAQ      H + +      ++ A  Q+S
Sbjct: 165 ESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 23  VRNEQTTHGSPYHVHPY 39
           VRN   THG P    PY
Sbjct: 224 VRNLNRTHGFPNDAQPY 240


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 30  HGSPYHVHPYPSPVRLQHAFQ-AQSSPKLFHPKGLKPHLDARTFATP 75
           H +P+H H + +    QH+   A SS       G  PH       TP
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETP 473


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 63  LKPHLDARTFATPQESPV 80
           +K H D+    +P++SP+
Sbjct: 279 IKTHSDSSVVGSPRDSPI 296


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 49  FQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTPRGSP 93
           F   S+ +L     L P LD+R    P+E   +         GSP
Sbjct: 404 FVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSACRIHGSP 448


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 79  PVLGRALCLTPRGSPIPGRVSHLNEKFQDSLTLNSDTDSLVAK 121
           P L    CL PR +P+ G   H     QDS T       L AK
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPH-----QDSATPADQPLDLSAK 518


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 33 PYHVHPYPSP 42
          PYH+ PY  P
Sbjct: 76 PYHMSPYGHP 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,005
Number of Sequences: 429
Number of extensions: 1510
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 140,377
effective HSP length: 52
effective length of query: 88
effective length of database: 118,069
effective search space: 10390072
effective search space used: 10390072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)