Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002111-TA|BGIBMGA002111-PA|undefined
(235 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 38 0.008
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 37 0.014
At1g17870.1 68414.m02211 expressed protein contains 6 transmembr... 33 0.13
At2g45920.1 68415.m05710 U-box domain-containing protein contain... 33 0.22
At3g23310.1 68416.m02940 protein kinase, putative contains prote... 31 0.89
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 31 0.89
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 31 0.89
At2g19530.1 68415.m02282 expressed protein and grail; expressio... 31 0.89
At5g65180.2 68418.m08199 expressed protein contains Pfam domain,... 30 1.2
At5g65180.1 68418.m08198 expressed protein contains Pfam domain,... 30 1.2
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 30 1.2
At3g02570.1 68416.m00248 phosphomannose isomerase type I family ... 30 1.6
At3g25130.1 68416.m03138 expressed protein 29 2.1
At5g50840.2 68418.m06299 expressed protein 29 2.7
At5g50840.1 68418.m06298 expressed protein 29 2.7
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 29 2.7
At3g10440.1 68416.m01252 hypothetical protein 29 2.7
At2g17990.1 68415.m02091 expressed protein 27 8.3
At1g58260.1 68414.m06625 cytochrome P450 family protein similar ... 27 8.3
At1g21390.1 68414.m02676 expressed protein 27 8.3
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 117 KKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQK 176
K +K E+ E D G+ + + ++Q LE++++ + E L K E R+K
Sbjct: 19 KALKQKNEIVESSPVSDKGKETKSFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRKK 78
Query: 177 LLKDLKNNWEL--MQKAFLQLPMLTDTIPKILRKTKMEQELKQLEKDIALVE--SNPYI 231
++ K EL +QK P +T + L +T+ E++ K+ +KD A + S PYI
Sbjct: 79 EVEQEKLKTELKKLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYI 137
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 148 IQKALEEIRLADQNKESL---CKLISEEERQ-KLLKDLKNNWELMQKAFLQLPMLTDTIP 203
I++ EEIR+ Q+ S KL+ +E+++ + ++D+ E + A L+ ++ +P
Sbjct: 224 IEEPREEIRVTPQSDSSSLEKAKLVVDEKKEMQTIRDVMFKTEKSKSAKLKSKIVKKIVP 283
Query: 204 KILRKTKMEQELKQLEKDIALVE 226
K LR K ++++K EK+ VE
Sbjct: 284 KKLRSYKKKKKMKNKEKEEEEVE 306
>At1g17870.1 68414.m02211 expressed protein contains 6 transmembrane
domains; similar to predicted metalloproteases
Length = 573
Score = 33.5 bits (73), Expect = 0.13
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 136 RVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQ--KAFL 193
RV E + + A E+ D N SEEE +K K + +W+ + K F+
Sbjct: 57 RVREPVNEAPSPVALAEEQKEDHDNNNAPPSPESSEEEEEKKSKQQEMDWKTDEEFKKFM 116
Query: 194 QLPMLTDTIPKILRKTKMEQELKQLEKDIALVESNPYIYIY 234
P + I L KT+ +++LK+L K+ NP I IY
Sbjct: 117 GNPSIEAAIK--LEKTRTDRKLKELNKESN--SENPIIGIY 153
>At2g45920.1 68415.m05710 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 400
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 142 VRRNRKIQKA-LEEIRLADQNKESLCKLISEEERQKLLKD--LKNNWELMQKAFLQLPML 198
++R ++ + A LEE++ + + L K+ + E+ + + + + ++ L+QK + +
Sbjct: 225 IKRGKEWESAYLEELKQRKETEMELKKVREKLEKMRYISENRITESYMLVQKLQDKYNLA 284
Query: 199 TDTIPKILRKTKMEQELKQLEKDIALVE 226
T K+LRK K E++L +DIA++E
Sbjct: 285 T----KVLRKAKEERDLLIKGRDIAIIE 308
>At3g23310.1 68416.m02940 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 568
Score = 30.7 bits (66), Expect = 0.89
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 95 KAIKTKAQPVEPRLVDTRDGHIK---KIKGSGEVPEYCLRPDFGRVPEYLVRRNRK---I 148
K +K+K + +T G++K K G E + +Y+ +K
Sbjct: 9 KKLKSKGKEKSSNKKETSRGNVKEGSKTAGGEEAVSNVTKQKAAAAKQYIENHYKKQVQS 68
Query: 149 QKALEEIRLADQNKESLCKLISEEERQKLLKDL-KNNWELMQK 190
Q+ +E R +NK + + +SEEE++ LLKDL K E M++
Sbjct: 69 QQQRKERRDMLENKLAAAE-VSEEEQKNLLKDLEKKETEYMRR 110
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 30.7 bits (66), Expect = 0.89
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 97 IKTKAQPVEPRLVDTRDGHIKKIKG-SGEVPEYCLRPDFGRVPEYLVRRNRKIQKALEEI 155
I ++ + E ++ TRD H+K G + L+P+ + ++ + R ++K L++I
Sbjct: 664 IDSEEEESESDILRTRDSHVKHFSSIGGTRMDSFLQPE-DELTQHNSKEVRALRKKLQQI 722
Query: 156 RLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKILRKTKMEQEL 215
+ + K+S +L+ ++ KL K L ++ + ++L + + P+ T + E
Sbjct: 723 EILEA-KQSRGQLLDGQQIAKLQKKLD-----IESSLVELGIPVEEFPEAKATTALPLEG 776
Query: 216 KQLEK 220
K +K
Sbjct: 777 KANKK 781
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 30.7 bits (66), Expect = 0.89
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 97 IKTKAQPVEPRLVDTRDGHIKKIKG-SGEVPEYCLRPDFGRVPEYLVRRNRKIQKALEEI 155
I ++ + E ++ TRD H+K G + L+P+ + ++ + R ++K L++I
Sbjct: 661 IDSEEEESESDILRTRDSHVKHFSSIGGTRMDSFLQPE-DELTQHNSKEVRALRKKLQQI 719
Query: 156 RLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKILRKTKMEQEL 215
+ + K+S +L+ ++ KL K L ++ + ++L + + P+ T + E
Sbjct: 720 EILEA-KQSRGQLLDGQQIAKLQKKLD-----IESSLVELGIPVEEFPEAKATTALPLEG 773
Query: 216 KQLEK 220
K +K
Sbjct: 774 KANKK 778
>At2g19530.1 68415.m02282 expressed protein and grail; expression
supported by MPSS
Length = 202
Score = 30.7 bits (66), Expect = 0.89
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 159 DQNKESLCKLISEEERQKLLKDLKNNWEL-MQKAFLQLPMLTDTIPKILRKTKMEQELKQ 217
D+ KE L K I EE+R+ KD K ++ +KA L+ + + IPK+L ++ L+
Sbjct: 137 DEQKE-LFKWILEEKRKIEPKDRKEKKQIDEEKAILKQFIRAERIPKLLPDDSVDSSLRD 195
Query: 218 LEK 220
+K
Sbjct: 196 WDK 198
>At5g65180.2 68418.m08199 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 311
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 142 VRRNRKIQKALEEI--RLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLT 199
VRR RK++K +E+ D KESL K + EEE L+ + E ++ L
Sbjct: 68 VRRIRKMEKDVEDACSTAKDPRKESLAKELEEEE-----NILRQSVEKLKSVEESRTSLV 122
Query: 200 DTIPKILRKTKMEQELKQLEKDIALVE 226
+ + + LR + E EL+ L+ I + +
Sbjct: 123 NHLREALR--EQESELENLQSQIQVAQ 147
>At5g65180.1 68418.m08198 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 439
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 142 VRRNRKIQKALEEI--RLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLT 199
VRR RK++K +E+ D KESL K + EEE L+ + E ++ L
Sbjct: 196 VRRIRKMEKDVEDACSTAKDPRKESLAKELEEEE-----NILRQSVEKLKSVEESRTSLV 250
Query: 200 DTIPKILRKTKMEQELKQLEKDIALVE 226
+ + + LR + E EL+ L+ I + +
Sbjct: 251 NHLREALR--EQESELENLQSQIQVAQ 275
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 146 RKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKI 205
+K+++A+E ++ +KE+ +++S +E + L D+ + +Q AFL+L + + K
Sbjct: 436 KKLREAIENLKADLMDKETELQIVS-DENETLKSDIHKSETDVQDAFLKLGIAMEEADKS 494
Query: 206 LRK-TKMEQELKQLEKDIALVES 227
+K ++ ++L+ + + +E+
Sbjct: 495 SKKAVRVTEQLEATQASNSEMET 517
>At3g02570.1 68416.m00248 phosphomannose isomerase type I family
protein contains Pfam profile: PF01238 phosphomannose
isomerase type I
Length = 432
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 88 FKILNIKKAIKTKAQPVEPRLVDTRDGHIKKIKGSGEVPEYCLR-PDFGRVPEYL-VRRN 145
FK+L++ + + +A P + H K PE L F + ++ ++
Sbjct: 112 FKVLSVARPLSIQAHPDKKLAKKMHKAHPNLYKDDNHKPEMALAYTQFEALCGFIPLQEL 171
Query: 146 RKIQKALEEI-RLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPK 204
+ + +A+ EI L + + I+E + +K+ ++ + L+ A + K
Sbjct: 172 KSVIRAIPEIEELVGSEEANQVFCITEHDEEKVKSVVRTIFTLLMSA--DADTTKKIVSK 229
Query: 205 ILRKTKMEQELKQLEKDIALV 225
+ R+ ME + +QL LV
Sbjct: 230 LKRRLHMESQERQLTDKERLV 250
>At3g25130.1 68416.m03138 expressed protein
Length = 406
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 166 CKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKILRKTKMEQELKQLEKDIALV 225
CKL E + + + WE + + + K+ +KTK + K +EK++ +
Sbjct: 290 CKLFEERHNADVGQGMDQLWETYETQTEKKQQTEEEKKKLKKKTKSMMKTKSIEKEVIVE 349
Query: 226 ESN 228
E +
Sbjct: 350 EED 352
>At5g50840.2 68418.m06299 expressed protein
Length = 405
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 141 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQK 176
LV +++K LE+ + ESLC+ + E +QK
Sbjct: 359 LVEERERLKKLLEKTKKQKDKLESLCRSLQAERKQK 394
>At5g50840.1 68418.m06298 expressed protein
Length = 404
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 141 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQK 176
LV +++K LE+ + ESLC+ + E +QK
Sbjct: 358 LVEERERLKKLLEKTKKQKDKLESLCRSLQAERKQK 393
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 148 IQKALEEIRLADQ-NKESLCKLISEEERQKLLKDLKNNWELMQKAFL 193
I +L E+ D NK + K ++EEERQ++ + +W+L+ + L
Sbjct: 89 INLSLSELAALDMCNKRVIFKPMNEEERQEMKRRCGGSWKLVLRFLL 135
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 160 QNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKILRKTKMEQELKQLE 219
QN+++L ++ ++Q +L K N E +QKA T + ++ + ++ +LK+L
Sbjct: 48 QNQKNLMNQGAKHQQQAILISSKENAENLQKALRNSSENTKLMKVVMERDGIKSDLKKLR 107
Query: 220 KDIALVE 226
+ V+
Sbjct: 108 IEFQKVQ 114
>At2g17990.1 68415.m02091 expressed protein
Length = 338
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 148 IQKALEEIRLADQNKESLCKLISE-EERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKIL 206
+++ + + A +N+E LC++ E E + + N E + + Q + + +++
Sbjct: 224 VEETMRQREKAVENEEELCRVKREFESLKSYVSTFTNVRETLLSSERQFKTIEELFERLV 283
Query: 207 RK-TKMEQELKQLEKDI-ALVESN 228
K T++E E Q E ++ L+E N
Sbjct: 284 TKTTQLEGEKAQKEVEVQKLMEEN 307
>At1g58260.1 68414.m06625 cytochrome P450 family protein similar to
cytochrome P450 GI:984542 from [Sorghum bicolor]
Length = 530
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 146 RKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIPKI 205
R++ + +E+ LAD+++ LIS + NW+L++K M T+ K
Sbjct: 94 REVLREKDEV-LADRSESYASHLISHGYKNISFSSYGENWKLVKKVMTTKLMSPTTLSKT 152
Query: 206 LRKTKMEQE 214
L +E +
Sbjct: 153 LGYRNIEAD 161
>At1g21390.1 68414.m02676 expressed protein
Length = 248
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 176 KLLKDLKNNWELMQKAFLQLPMLTDTIPKILRKTKMEQEL 215
K L ++K N E +K F +LP + K++RKTK ++ +
Sbjct: 88 KDLVEVKVNQENERKVFDELPKRANRQSKVVRKTKSDKRV 127
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,029,370
Number of Sequences: 28952
Number of extensions: 193765
Number of successful extensions: 797
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 25
length of query: 235
length of database: 12,070,560
effective HSP length: 79
effective length of query: 156
effective length of database: 9,783,352
effective search space: 1526202912
effective search space used: 1526202912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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