Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002110-TA|BGIBMGA002110-PA|undefined
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    27   2.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   3.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   6.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   6.4  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 77  HAELQID---RALSAIEKAEDLMDQAERAATVEERFEKAHAAYKM 118
           H E++ID   RA + + K+ED  ++ E     EER +K  +++++
Sbjct: 172 HIEMEIDLLKRAQAELMKSEDSPEKDEETLRREERKQKEGSSWRL 216


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 152 ELIKQNIQSLEYQFGSFSVEGMVSRSPQDNKEIYTTDGLELRFLRAAGQEAQRAGIDSGF 211
           E+ K +++ LE Q        + + S  D  E  T D  +L+FL  AG +AQ   + +G 
Sbjct: 520 EIEKTSVKLLEAQSTPADTSCLPTLSVSDIPE--TIDETKLKFLDIAGMKAQWYDLAAGL 577

Query: 212 T 212
           T
Sbjct: 578 T 578


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 60   CKGPVLWCGKRALCQQCHAELQIDRALSAIEK 91
            CK  +LWCG     +    E  + R +S +EK
Sbjct: 1776 CKNVLLWCGSSNNIEILDDESNLLRLMSLVEK 1807


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 91  KAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLAR 139
           K   L+DQ  +         KA  A   + +  HRHH  LR  A+ + R
Sbjct: 146 KIRVLLDQGNQMHRPVAPETKAEEAEHQENEKHHRHHFRLRKFANAIDR 194


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 148 SRSVELIKQNI-QSLEYQFGSFSVEGMVSRSPQDNKEIYTTD 188
           +  ++LI+  + +S+E    + S+E  VS +  DN E  TTD
Sbjct: 419 AEEMKLIRSKLSESIESGINTISIEENVSSTNSDNLEGSTTD 460


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 60  CKGPVLWCGKRALCQQCHAELQIDRALSAIEKAEDL 95
           CKG  +     A     H E +  RALS  E+AE +
Sbjct: 640 CKGDEIGAEALATASHTHQEKKKGRALSETEQAEKI 675


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.131    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,691
Number of Sequences: 5004
Number of extensions: 30284
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 2,362,478
effective HSP length: 70
effective length of query: 145
effective length of database: 2,012,198
effective search space: 291768710
effective search space used: 291768710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)