Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002110-TA|BGIBMGA002110-PA|undefined
(215 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 36 0.025
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 35 0.044
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 32 0.31
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475 30 1.2
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 3.8
09_06_0097 + 20845417-20845518,20845728-20846581,20846666-208467... 29 3.8
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 29 3.8
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 5.0
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 6.6
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 27 8.8
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 70 RALCQQCHAELQIDRALSAIEK--AEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHH 127
RA+ ++ A +++ +++EK AE +QA+ A+ ++ + A +M++Q RHH
Sbjct: 185 RAIAEREEAVAKLEGEKASLEKLLAEREKEQAQEASELQNSMIETMEAVEMEKQ---RHH 241
Query: 128 TSLRAAADRLARIYADSGEFSRSVELIKQNI 158
++ A RLA++ + E ++S+ + N+
Sbjct: 242 STRMEALARLAKLEVTNAELAKSLAREQWNL 272
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 45 RKDFVSLFTEYACQTCKGPVLWCGKRALCQQCHAELQIDRALSAIEKAED 94
++DF+ + +Y+C C ++ GKR +C QC + D+ A ++ ED
Sbjct: 1360 KEDFIMVHLQYSCSHCC-TLMVSGKRWVCHQCRSFYICDKCYDAEQQLED 1408
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 11 YGPHRSRETTAQRRAQLRAQYMFNCMCTACLDTDRKDFVSLFTEYAC--QTCKGPV 64
YGP +R+ LR Y F+C C++C D V + C C G V
Sbjct: 518 YGPQVGEMDLPERQKSLRENYYFSCGCSSCSVLSLSDLV--MNSFCCPQSNCLGAV 571
>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
Length = 345
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 13 PHRSRETTAQRRAQLRAQYMFNCMCTACLDTDRKDFVSLFTEYACQTCKGPVLWCGKRAL 72
P ++ + AQR + +++ +CT L+ D + F+ A + + VL R
Sbjct: 237 PIGAKASKAQRSCKEKSKVQ---VCTTELEDDIRKFMDAHA--ATKEGQNEVLETQIRVS 291
Query: 73 CQQCHAELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRH 126
HA ++ R + IE DLM++ R + R E H M++++++++
Sbjct: 292 IDN-HAAKKLSRQTAMIETYRDLMNKDTRKMPDDMRSELVHMLKCMREEIFNKN 344
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 89 IEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLARIYADSGEFS 148
+E+ + ++ R +RF+ HA + H + R AA A A SG+ S
Sbjct: 1496 LERVRKMSEKIARLEQETQRFQ--HALLR------HEEERATRRAAAAAATAAASSGKSS 1547
Query: 149 RSVELIKQNIQSLEYQFG 166
+V+ +Q +EY +G
Sbjct: 1548 AAVQRRSSRVQLVEYLYG 1565
>09_06_0097 +
20845417-20845518,20845728-20846581,20846666-20846726,
20847320-20847358,20847602-20847682
Length = 378
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 69 KRALCQQCHAELQIDRALSAIEKAEDLMDQAER-AATVEERFEKAHAAYKMKQQVWHRHH 127
+R +C+ A +++ L E+ EDL+ Q E+ +++E FE AHA K + H
Sbjct: 12 RRNICEGAEAMFKLEAVLK--EEEEDLLKQEEQLKQSLQELFE-AHATVKARIDKVHTQV 68
Query: 128 TSLRAAADRLARI----YADSGEFSRSVELIKQNIQSLE 162
++L + + + + R E+ K N E
Sbjct: 69 EKDEEELEKLRLVERQAMSRADKIRRDAEIAKANANEFE 107
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 45 RKDFVSLFTEYACQTCKGPVLWCGKRALCQQCHAELQIDRALSAIEKAED 94
+ D + + +Y+C C + G+R +C +C + DR +A ++ E+
Sbjct: 1258 KDDLIMVHLQYSCSHCC-TFMVSGRRWVCNECKSFYICDRCYNAEQRLEE 1306
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 92 AEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLARIYADSGEFSRSV 151
+ED++ + +R A Y +KQ +WH S+R+ LA + +G++ V
Sbjct: 959 SEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLA-LSGKTGDWQLGV 1017
Query: 152 EL 153
++
Sbjct: 1018 QI 1019
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 90 EKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLA 138
++A D QA +A E+ +K H+ + + ++ RH SLR A A
Sbjct: 146 QQAGDAAKQAAPSADDEDGGKKRHSRWNFLRNLFRRHKGSLRDAVKAAA 194
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 89 IEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHT 128
+E E+ ++ ER A +E E +AAYK + +H+T
Sbjct: 394 MEVTEEEKERKERKAAAQEEKEAGNAAYKKDFETAIQHYT 433
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.131 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,743,852
Number of Sequences: 37544
Number of extensions: 207131
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 14
length of query: 215
length of database: 14,793,348
effective HSP length: 79
effective length of query: 136
effective length of database: 11,827,372
effective search space: 1608522592
effective search space used: 1608522592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
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