GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002110-TA|BGIBMGA002110-PA|undefined
         (215 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ...    36   0.028
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    31   0.45 
At5g60350.1 68418.m07566 hypothetical protein                          31   0.78 
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    29   1.8  
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof...    29   1.8  
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2...    29   2.4  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    29   2.4  
At3g02860.2 68416.m00279 expressed protein                             28   5.5  
At3g02860.1 68416.m00278 expressed protein                             28   5.5  
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    28   5.5  
At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At5g24900.1 68418.m02948 cytochrome P450 family protein similar ...    27   9.7  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   9.7  

>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
           SET domain-containing protein contains Pfam profiles
           PF00856: SET domain,  PF01753: MYND zinc finger (ZnF)
           domain; confirmed by cDNA (Paola Vittorioso--accession
           not assigned yet (paola.vittorioso@uniroma1.it)
          Length = 480

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 19  TTAQRRAQLRAQYMFNCMCTACLDTDRKDFV---SLFTEYAC--QTCKGPVLWC--GKRA 71
           +T  R+  L+ QY+F+C C  C +  +   +   ++   Y C  + C G +L     K  
Sbjct: 253 STLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGF 312

Query: 72  LCQQC---HAELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHT 128
           +CQ+C    ++ ++ +  S ++   +    +  A   +   E      K++ +++H    
Sbjct: 313 VCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSI 372

Query: 129 SLRAAADRLARIYAD 143
            L    ++L ++  D
Sbjct: 373 PLMRTREKLLKMLMD 387


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 11  YGPHRSRETTAQRRAQLRAQYMFNCMCTACLDTDRKDFVSLFTEYAC--QTCKGPVL 65
           YGP   +     R   L  +Y F+C C  C   +  D V     Y C    C G VL
Sbjct: 521 YGPEVGKWDCKNRIRFLEEEYFFHCRCRGCAQINISDLV--INGYGCVNTNCTGVVL 575


>At5g60350.1 68418.m07566 hypothetical protein
          Length = 292

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 74  QQCHAELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQ 121
           ++C   L ID +L  +E  +  +D+A+  +TVE+R E   A     +Q
Sbjct: 157 KECDGVLSIDESLKVVETEK--VDKADEKSTVEQRLENVDANRTQAEQ 202


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 69  KRALCQQCHAELQIDRALSAIEKAEDLMDQAERAATVEERFEKA 112
           +RA  Q+ HAE +   A  A EKAE    +A   A  E R ++A
Sbjct: 586 ERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAEVREKEA 629


>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 752

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 79  ELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLA 138
           E +I R    I+ A+D+  + + A+ +++      AAYK    +  R+++ ++AA D   
Sbjct: 383 EDEIKRFRQDIDAADDVKTKLKTASALQQDLRAEIAAYK-DSNMGKRNNSDIQAAVDSAR 441

Query: 139 RIYADSGEFSRSVELIKQNIQSLEYQFGSFSVEGMVSRSPQDNKE 183
           +   +  E   ++E     +++L+   GS   E  ++R   D  E
Sbjct: 442 K---ELEEVISNIEKANSEVKTLKIIVGSLQSE--LAREKHDLSE 481


>At4g12780.1 68417.m02005 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 485

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 69  KRALCQQCHAELQIDRALSAIEKAEDLMDQAERAATVEERFEKAHAAYKMKQQVWHRH-H 127
           +RA  Q+ HAE +   A  A +KA      A+ AA   E+ EKA A  K +     R   
Sbjct: 169 ERAAVQRAHAEARERAAAGARDKA------AKAAAEAREKAEKAAAEAKERANAEAREKE 222

Query: 128 TSLRAAADRLARIYADSGEFSRSVELIKQ---NIQSLEYQFGSFS 169
           T +RA    + R  A++   + +    KQ   N   L+  F S S
Sbjct: 223 TRVRAERAAVERAAAEARGRAAAQAKAKQQQENTNDLDSFFSSIS 267


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 45   RKDFVSLFTEYACQTCKGPVLWCGKRALCQQCHAELQIDRALSAIEKAED 94
            ++DF+ +  +++C  C   ++  G R +C QC      D    A +K ED
Sbjct: 1401 KEDFIMVHLQHSCTHCC-TLMVTGNRWVCSQCKDFQLCDGCYEAEQKRED 1449


>At3g02860.2 68416.m00279 expressed protein
          Length = 313

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 97  DQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLAR 139
           ++ + A T+EE  ++   +YK K ++  R    L+AA  RLA+
Sbjct: 235 EEVDAAETIEEEEQREQRSYKEKVEILKRKKMELKAA--RLAK 275


>At3g02860.1 68416.m00278 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 97  DQAERAATVEERFEKAHAAYKMKQQVWHRHHTSLRAAADRLAR 139
           ++ + A T+EE  ++   +YK K ++  R    L+AA  RLA+
Sbjct: 234 EEVDAAETIEEEEQREQRSYKEKVEILKRKKMELKAA--RLAK 274


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 77  HAELQIDRALSAIEKAEDLMDQAERAATVEERFEK 111
           HA+L I + LSA  + +  +     AAT E+RFE+
Sbjct: 147 HADLMISQILSADVEPKKKLKHIVMAATREQRFER 181


>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 138 ARIYADSGEFSRSVELIKQNIQSLEYQFG 166
           A+ Y D G+  R+VEL+K +   LE + G
Sbjct: 239 AKFYIDGGDCDRAVELLKMSENRLEKKDG 267


>At5g24900.1 68418.m02948 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           fatty acid omega-hydroxylase cytochrome P450 4A11 - Homo
           sapiens, PIR:I53015
          Length = 525

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 40  CLDTDRKDFVSLFTEYACQTCKGPVLW 66
           C DT +KD + L  E A ++C G  LW
Sbjct: 293 CKDTHKKDLMQLILEGAMRSCDGN-LW 318


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 41  LDTDRKDFVSLFTEYACQTCKGPVLWCGKRALCQQCHA----ELQIDRALSAIEKAEDLM 96
           L  +++   S  T++AC    G  L CG       CHA       +D+   + EK  DL 
Sbjct: 579 LAAEKRMICSDRTQFACDNLCGNPLPCGNHYCSYFCHALDIRSSSLDKRSESCEKC-DLR 637

Query: 97  DQAER 101
            Q ER
Sbjct: 638 CQKER 642


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.131    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,514,450
Number of Sequences: 28952
Number of extensions: 162156
Number of successful extensions: 513
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 16
length of query: 215
length of database: 12,070,560
effective HSP length: 78
effective length of query: 137
effective length of database: 9,812,304
effective search space: 1344285648
effective search space used: 1344285648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)