GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002109-TA|BGIBMGA002109-PA|IPR008940|Protein
prenyltransferase
         (357 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   7.8  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 177 DINTVPCYCSETCREHGLHTFHRWECPG 204
           D++ +   CS   R+  L  F RW   G
Sbjct: 158 DVDLIGNVCSYVVRDKLLKAFTRWRMEG 185


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 174 CRTDIN---TVPCYCSETCREHGLHTFHRWECP 203
           C+  IN   + PC    TC++H  H  +   CP
Sbjct: 58  CQNRINLCDSSPCLNGATCQDHTTH--YTCHCP 88


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 92  KKLEVVKDVDRSEEDE 107
           KKL VVKD  +S  DE
Sbjct: 214 KKLIVVKDKKKSRSDE 229


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,226
Number of Sequences: 317
Number of extensions: 2838
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 357
length of database: 114,650
effective HSP length: 58
effective length of query: 299
effective length of database: 96,264
effective search space: 28782936
effective search space used: 28782936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)