GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002109-TA|BGIBMGA002109-PA|IPR008940|Protein
prenyltransferase
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    34   0.035
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   5.4  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    27   5.4  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   9.4  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 33.9 bits (74), Expect = 0.035
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 50  LIELCRTVAAR----EALIEAKQHAATLK-LSMSHKGEFDRHLCDLEKKLEVVKDVDRSE 104
           L + C+  AA+    +++ +AKQ+AA +  L +   G  D+HL  L+ + ++  D++  E
Sbjct: 576 LPKACKVPAAQGSPAKSIRKAKQNAAFIMCLDLIRMGLIDKHLKPLDFRRKIA-DLETLE 634

Query: 105 EDEIPD-FYMGENEEYVSAS 123
           EDE+ D  Y+   E YV  S
Sbjct: 635 EDELKDEGYIETYERYVPKS 654


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 103 SEEDEIPDFYMGENEEYVSASNALQLKRSKAAGRH--VVTKKATKRGDVIFSEEPYACVT 160
           + E+++P +Y   +  +VS+SN    K  +A  R+  ++  + T+  D++  E+ Y  VT
Sbjct: 615 ASEEDLPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM--EQHYRAVT 672


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 98  KDVDRSEEDEIPDFYMGENEE 118
           KD++ +EED++ DF   E EE
Sbjct: 325 KDLEENEEDDLGDFIAEEEEE 345


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 126 LQLKRSKAAGRHVVTKKATKRGDVIFSEEPYACVTLPN 163
           ++L RSK    H + K+A    D I    PY C+  P+
Sbjct: 136 MRLARSKRFSAHNIAKEANTDIDRIKYWNPYICLIKPS 173


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,295
Number of Sequences: 5004
Number of extensions: 56851
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 357
length of database: 2,362,478
effective HSP length: 74
effective length of query: 283
effective length of database: 1,992,182
effective search space: 563787506
effective search space used: 563787506
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)