Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002109-TA|BGIBMGA002109-PA|IPR008940|Protein
prenyltransferase
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 38 0.016
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 31 1.4
08_02_0891 + 22312537-22312720,22313446-22313525,22314484-223146... 31 1.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 5.7
11_01_0294 + 2212807-2212876,2213664-2213843,2214505-2214594,221... 29 7.5
10_08_0800 + 20660654-20660780,20660909-20661018,20661136-206613... 29 7.5
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 29 7.5
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 7.5
06_03_0684 - 23492110-23492567,23495610-23495742,23495844-23496140 28 10.0
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 28 10.0
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 37.5 bits (83), Expect = 0.016
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 75 LSMSH-KGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYM-----GENEEYVSASNALQL 128
LS SH + L DLE++++ V++ D EED IP M GE ++ ++ SN +
Sbjct: 1006 LSTSHCENHHASSLMDLEQQVKTVRENDMGEEDVIPSHAMMYNDIGEGKQTLAKSNT--M 1063
Query: 129 KRSKAAGRHVVTKKATKRG 147
++ + G+ KK K+G
Sbjct: 1064 RKGRNVGKQECRKKDGKKG 1082
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 31.1 bits (67), Expect = 1.4
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 51 IELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPD 110
IE+C T+ +L + + A ++K+S+ + E L +++ + DV+ S EDE
Sbjct: 130 IEIC-TLEVSNSL-QIRSPALSIKMSVRRRSESMEGLFSFDERKDRRSDVENS-EDERRR 186
Query: 111 FYMGE-NEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVIFSEEPYACVTLPNE 164
+G ++ ++ASN L K R V + + DV EE A + E
Sbjct: 187 LSIGSLKKKALNASNKLTHSLKKRGKRKVENRPSFTIEDVRDEEEERAVFSFQQE 241
>08_02_0891 +
22312537-22312720,22313446-22313525,22314484-22314640,
22314661-22314716
Length = 158
Score = 30.7 bits (66), Expect = 1.9
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 133 AAGRHVVTKKATKRGDVIFSEEPYACVTLPNEGGRLVCETCCRTDINTVP-----CYCSE 187
A ++ K+ KR V E Y LP E C+ + NT+P C+C+
Sbjct: 59 AVADYIQNFKSAKRAYVTIFAEIYGSFFLPKNERDPRYERKCKENTNTMPTSITWCWCT- 117
Query: 188 TCREHGLHTFHRWECPGAQFDLFPTIGI 215
+CR LH C A L IG+
Sbjct: 118 SCRHAVLHGVLPSACSPALLALHARIGM 145
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 5.7
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 48 DCLIELCRTVAAREALI--EAKQHAATLKLSMSHKGEFD---RHLCDLEKKLEVVKD-VD 101
D + L V A+E+L+ E +Q+A+TLKL E D R L D ++K + ++ +
Sbjct: 1489 DTIRRLEENVGAKESLLLTEREQNASTLKLLAEAHLEIDELIRKLEDSDRKSDSLQSTIK 1548
Query: 102 RSEEDEI 108
R EED I
Sbjct: 1549 RLEEDGI 1555
>11_01_0294 +
2212807-2212876,2213664-2213843,2214505-2214594,
2215054-2215238,2215399-2215521,2215593-2215745,
2216090-2216416
Length = 375
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 41 KLLLRRADCLIELCRTVAAREALIEAKQHA---ATLKLSMSHKGEFDRHLCDLEKKL 94
K L RR EL +T +ARE ++AK+H+ ++ + E D+ L +K+L
Sbjct: 277 KALFRRGKARAELGQTESAREDFLKAKKHSPEDKEIQRELRSLAEQDKALYQKQKEL 333
>10_08_0800 +
20660654-20660780,20660909-20661018,20661136-20661317,
20661521-20661656,20661746-20661994
Length = 267
Score = 28.7 bits (61), Expect = 7.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 131 SKAAGRHVVTKKA--TKRGDVIFSEEPYACVTLPNEGGRLVCETCCRTDINTVPC 183
S A + VVT +A T R D++ S YA + P +L + VPC
Sbjct: 89 STAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPC 143
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 100 VDRSEEDEIPDFYMGENEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVIFSEEP 155
VD E+EIP E Y A L+LKR +H+ + + DV F P
Sbjct: 223 VDSVYEEEIPGNISFLEENYSKAKFYLRLKRRNGRVKHLYEELHVEGNDVRFVSAP 278
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 61 EALIEAKQHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYMGENEEYV 120
E + KQ + + S+ + + +C LEK LE +KD + E +I ++ N
Sbjct: 1362 ELKMRLKQTESAAETSLQEHELYVKRVCVLEKDLETLKDERKGMEIKIQEYQERGNMLKA 1421
Query: 121 SASNALQLKRSKAAGRHVVTKKATK 145
L L+ ++ +T+ +K
Sbjct: 1422 KEIELLSLEHAQNTTERGMTEVISK 1446
>06_03_0684 - 23492110-23492567,23495610-23495742,23495844-23496140
Length = 295
Score = 28.3 bits (60), Expect = 10.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 103 SEEDEIPDFYMGENEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVI 150
+E D+ F++ + EEY+ LQ + ++AAGR + R +++
Sbjct: 78 AELDKFNSFFVEKEEEYIIRQKELQDRVARAAGRESKEELMRVRKEIV 125
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 56 TVAAREALIEAKQHAA-TLKLSMSHKGEFD----RHLCDLEKKLEVVKDVDRSEEDE 107
T A+ L+ H+ +++++ H+ E + RH C + K+L + K++DR+E +E
Sbjct: 34 THPAKHHLVSKTIHSVFNIEVNVRHQEEDNKSAFRHFCRILKRLPINKNLDRAEIEE 90
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,694
Number of Sequences: 37544
Number of extensions: 353166
Number of successful extensions: 755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 10
length of query: 357
length of database: 14,793,348
effective HSP length: 83
effective length of query: 274
effective length of database: 11,677,196
effective search space: 3199551704
effective search space used: 3199551704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -