Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002109-TA|BGIBMGA002109-PA|IPR008940|Protein
prenyltransferase
(357 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 33 0.31
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 33 0.31
AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical ... 31 1.7
AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 29 3.8
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 28 8.8
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 33.1 bits (72), Expect = 0.31
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 57 VAAREALIEAK-QHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYMGE 115
V +E +I K + +A K GE H D +++ E + ++DE G+
Sbjct: 171 VTPQEKIIPQKTRSSARRKRRDGSDGEGGGH--DSDQEFEALIKQHEKQQDEAEK---GK 225
Query: 116 NEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVIFSEEPYACVTLPNEGGRLVCETCCR 175
E ++ + A KR A +K+A K V+ C +G ++C+TC R
Sbjct: 226 EEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGELMLCDTCTR 285
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 33.1 bits (72), Expect = 0.31
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 57 VAAREALIEAK-QHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYMGE 115
V +E +I K + +A K GE H D +++ E + ++DE G+
Sbjct: 171 VTPQEKIIPQKTRSSARRKRRDGSDGEGGGH--DSDQEFEALIKQHEKQQDEAEK---GK 225
Query: 116 NEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVIFSEEPYACVTLPNEGGRLVCETCCR 175
E ++ + A KR A +K+A K V+ C +G ++C+TC R
Sbjct: 226 EEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGELMLCDTCTR 285
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 33.1 bits (72), Expect = 0.31
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 57 VAAREALIEAK-QHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYMGE 115
V +E +I K + +A K GE H D +++ E + ++DE G+
Sbjct: 171 VTPQEKIIPQKTRSSARRKRRDGSDGEGGGH--DSDQEFEALIKQHEKQQDEAEK---GK 225
Query: 116 NEEYVSASNALQLKRSKAAGRHVVTKKATKRGDVIFSEEPYACVTLPNEGGRLVCETCCR 175
E ++ + A KR A +K+A K V+ C +G ++C+TC R
Sbjct: 226 EEARINRAAAKVDKRKAALESARASKRARKEQGVVEENHQENCEVCNQDGELMLCDTCTR 285
>AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical
protein Y59A8A.3 protein.
Length = 676
Score = 30.7 bits (66), Expect = 1.7
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 27 KLAISNGYPSELRHKLLLRRADCLIELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRH 86
K+A + + SEL ++ ++ VAA +A+ ++H LKL S F
Sbjct: 235 KVAQNQAHESELARQIQGIEGKLRVKEQELVAAGKAVKNNEEHEKELKLLRSTNSSFSTE 294
Query: 87 LCDLEKKLEVVKDVDRSEEDEIPDFYMGENEEYVS-ASNALQLKRSKAAGRHVVTKKATK 145
L + K+ E + E ++ + E E+ +S +A Q AA V + K
Sbjct: 295 LKTIRKEHEAQLQKKQEEWKKLHEQLEQEKEKLISEKEHAKQTHLKLAAAVENVEAELEK 354
Query: 146 RG 147
+G
Sbjct: 355 QG 356
>AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical
protein C16A11.5 protein.
Length = 643
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 73 LKLSMSHKGEFDRHLCDLEKKLEVVKDVDRSEEDEIPDFYMGENEE 118
LK S + + + + + +LEKKL+V + E E+ D G+ EE
Sbjct: 454 LKTSQNKENKMRKKVSELEKKLDVENVQNEQEVKEMEDDLRGKQEE 499
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 40 HKLLLRRADCLIELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRHLCDLEKK--LE-- 95
H++ ++ ++ L + E ++ A ++ + + G+FD+ E+K LE
Sbjct: 961 HRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQI 1020
Query: 96 VVKDVDRSEEDEIPD 110
+ D + EE+E+PD
Sbjct: 1021 IQADGEEEEEEEVPD 1035
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
F01G4.1 protein.
Length = 1474
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 40 HKLLLRRADCLIELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRHLCDLEKK--LE-- 95
H++ ++ ++ L + E ++ A ++ + + G+FD+ E+K LE
Sbjct: 961 HRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQI 1020
Query: 96 VVKDVDRSEEDEIPD 110
+ D + EE+E+PD
Sbjct: 1021 IQADGEEEEEEEVPD 1035
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 40 HKLLLRRADCLIELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRHLCDLEKK--LE-- 95
H++ ++ ++ L + E ++ A ++ + + G+FD+ E+K LE
Sbjct: 961 HRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQI 1020
Query: 96 VVKDVDRSEEDEIPD 110
+ D + EE+E+PD
Sbjct: 1021 IQADGEEEEEEEVPD 1035
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,127,283
Number of Sequences: 27539
Number of extensions: 326048
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 12,573,161
effective HSP length: 82
effective length of query: 275
effective length of database: 10,314,963
effective search space: 2836614825
effective search space used: 2836614825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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