GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002109-TA|BGIBMGA002109-PA|IPR008940|Protein
prenyltransferase
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ...    37   0.018
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    33   0.29 
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    29   3.6  
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta...    29   3.6  

>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
           SET domain-containing protein contains Pfam profiles
           PF00856: SET domain,  PF01753: MYND zinc finger (ZnF)
           domain; confirmed by cDNA (Paola Vittorioso--accession
           not assigned yet (paola.vittorioso@uniroma1.it)
          Length = 480

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 135 GRHVVTKKATKRGDVIFSEEPYACVTLPNEGGRLVCETCCRTDINTVPC-------YCSE 187
           GR + T +  + G+VI S++PY CV   N      C+ C +T+ N   C       YC  
Sbjct: 22  GRSLFTARDFRPGEVILSQKPYICVP-NNTSSESRCDGCFKTN-NLKKCSACQVVWYCGS 79

Query: 188 TCREHGLHTFHRWEC 202
           +C++      HR EC
Sbjct: 80  SCQK-SEWKLHRDEC 93


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 90  LEKKLEVVKDVDRSEEDEIPDFYMGENEEYVSASNALQLK------RSKAAGRHVVTKKA 143
           L+ +L+ + D   ++  E  D Y   N+  V    ++Q++       +K  GR +V++  
Sbjct: 179 LQNELKAIPDYQNNQTLE-HDEYRPSNDAGVDHLPSVQMEVKLRCVSTKEKGRGMVSECD 237

Query: 144 TKRGDVIFSEEPYACVTLPNEGGRLVCETCCRT-DINTVPC-------YCSETCR 190
            +   VI  EEP++ V +        C  C      +TVPC       YCSE+C+
Sbjct: 238 IEEASVIHVEEPFS-VVISKSCRETHCHFCLNELPADTVPCPSCSIPVYCSESCQ 291


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 91   EKKLEVVKDVDRSEEDEIPDFYMGENEEYVSAS--NALQLKRSKA 133
            EK LEVV  +  + +   PDF    +EEYV+ S  +AL ++ S A
Sbjct: 1501 EKWLEVVSALKEAAKTTCPDFSYFLSEEYVARSQRSALNIQNSNA 1545


>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1077

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 43  LLRRADCLIELCRTVAAREALIEAKQHAATLKLSMSHKGEFDRHLCDLEKKLEVVKDVDR 102
           LLR  +  I  C   AA +AL++     A   L+M+    + + +       E+++D D+
Sbjct: 832 LLRYKNAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQ 891

Query: 103 SEED 106
           +  D
Sbjct: 892 AASD 895


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,566,121
Number of Sequences: 28952
Number of extensions: 291235
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 4
length of query: 357
length of database: 12,070,560
effective HSP length: 82
effective length of query: 275
effective length of database: 9,696,496
effective search space: 2666536400
effective search space used: 2666536400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)