GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   4.3  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    23   9.9  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 53  SALFAVNAATIWRRWRNVDDLTRVVAELLDALGVRLGRQIIIK 95
           S  F ++ A  W  W ++D L  +V +L      RL +  I K
Sbjct: 74  SQCFVLHVAN-WEEWSSIDSLVPIVVDLPSKKQNRLLQSCITK 115


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 8   VFRWEQSVSGGLLVTYSLSTLGLALCAGI 36
           +F W  S+ GGL + Y +S       AG+
Sbjct: 93  LFLWGHSMGGGLALRYGISGTHRHKLAGV 121


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,350
Number of Sequences: 5004
Number of extensions: 10731
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 48 (23.4 bits)