GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1435 + 27079184-27082006                                         26   7.1  
04_04_0030 + 22279716-22280052,22280644-22281144,22281369-222816...    26   7.1  
11_06_0704 - 26450916-26451128,26451439-26451831                       26   9.4  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    26   9.4  
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128...    26   9.4  

>08_02_1435 + 27079184-27082006
          Length = 940

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 24  SLSTLGLALCAGIERCGGNAFQAFICGVGSALFAVNAATIWRRWRNVDDLTRVVAELLDA 83
           SL  L   L   +E      FQ  + GVG A F+V   T+   +R    LT V++ LL +
Sbjct: 700 SLGKLTSFLSRNLEWDSSPFFQFMVYGVGGAYFSVYKDTLQATFRGY-RLTFVISFLLTS 758

Query: 84  L 84
           +
Sbjct: 759 I 759


>04_04_0030 +
           22279716-22280052,22280644-22281144,22281369-22281692,
           22281860-22281945,22282105-22282517,22282612-22282878,
           22282977-22283730
          Length = 893

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 57  AVNAATIWRRWRNVDDLTRVVAELLDALGVRLGRQIIIK 95
           A  A    RR R  D   R  AE LDAL  R+GR ++++
Sbjct: 67  AARAVVTVRRRRKEDAKDRF-AEQLDALADRVGRSVLLE 104


>11_06_0704 - 26450916-26451128,26451439-26451831
          Length = 201

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 15  VSGGLLVTYSLSTLGLALCAGIERCGG 41
           V GG+L+++  +  GL+L   +  CGG
Sbjct: 126 VEGGMLLSFLGAWRGLSLLGSLRSCGG 152


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 1   MHLRSVRVFRWEQSVSGGLLVTYSLSTLGLALCAGIERCGGNAFQAFICGVGS 53
           M+   V  F  + S+S G+    + +T  L  C+    CG N   A IC VG+
Sbjct: 850 MNTGGVNQFGQQASISAGMSTPLA-ATRNLQTCS---ICGANGHSAQICHVGA 898


>01_06_1528 +
           38011391-38011635,38012366-38012566,38012659-38012836,
           38012946-38013208,38013380-38013649,38013753-38014950
          Length = 784

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 39  CGGNA--FQAFICGVGSALFAVNAATIWRR----WRNVDDLTRVVAELLDAL 84
           CG  A    AF   VG  LFA+  AT W R    WR     T V A +L +L
Sbjct: 269 CGAAAGVTAAFRAPVGGVLFALEEATSWWRSALLWRTF-STTAVAAMVLRSL 319


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,418
Number of Sequences: 37544
Number of extensions: 94920
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 14,793,348
effective HSP length: 73
effective length of query: 47
effective length of database: 12,052,636
effective search space: 566473892
effective search space used: 566473892
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)