GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_28951| Best HMM Match : DUF81 (HMM E-Value=8.5)                     28   1.8  
SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2)                  28   2.3  
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       27   4.1  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_44990| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  

>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 24   SLSTLGLALCAGIERCGGNAFQAFICGVGSALFAVNAATIWRRWRNVD 71
            SLS LG+A              +  C V S L A + AT W RWR VD
Sbjct: 1178 SLSRLGMARRQSTVYTN-RLLSSIHCRVISPLTAHSKATDWPRWREVD 1224


>SB_28951| Best HMM Match : DUF81 (HMM E-Value=8.5)
          Length = 267

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 17 GGLLVTYSLSTLGLALCAGIERCGGNAFQAFICGVGSALFAVNAATI 63
          GGL+      T+GL         GG  F A    VG  +F V+  T+
Sbjct: 46 GGLVFVVDCVTVGLVFVVDCVTVGGLVFVADCVTVGGLVFVVDCVTV 92


>SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2)
          Length = 183

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)

Query: 17  GGLLVTYSLSTLGLALCAGIERCGGNAFQAFICGVGSALFAVN 59
           GGL    S    GLA  A  +  GG AF A   G G   FA +
Sbjct: 88  GGLAFAASTGFGGLAFAASTKGFGGLAFAASTKGFGGLAFAAS 130


>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 37   ERCGGNAFQAFICGVGSALFAVNAATIWRRWRNVDDLTRVVAELL 81
            E CGG       CG GS        ++WRR R++ DL   +  +L
Sbjct: 1060 EHCGG------ACGDGSRQVPKGTLSLWRRSRSLSDLENKLNSVL 1098


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 29   GLALCAGIERCGGNAFQAFICGVGSALFAVNAATIWRRWRNVDDLTRVVAELLD-ALGVR 87
            G  + A  +   GN     +CG G  L+A N A    +W N    TRV       AL V 
Sbjct: 1468 GRLVMANGDTYNGNFVNDRMCGEGEMLYAKNGALYKGQWEN--SQTRVSQRTYPVALEVT 1525

Query: 88   LGRQIIIK 95
              +Q+  K
Sbjct: 1526 WPKQVYFK 1533


>SB_44990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 49  CGVGSALFAVNAATIWRRWRNVDDLTRVVAELLDALGVRLGRQI 92
           CG+ S   +  A T W  +RN+DD      E  D+ G+ +  ++
Sbjct: 129 CGIVSLDDSKGAGTHWVCYRNIDD---TYCEYFDSFGIGVPHEV 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,817
Number of Sequences: 59808
Number of extensions: 82695
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 16,821,457
effective HSP length: 74
effective length of query: 46
effective length of database: 12,395,665
effective search space: 570200590
effective search space used: 570200590
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)