GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128468-1|AAM75061.1| 1593|Drosophila melanogaster RE21811p pro...    27   8.7  
AE014298-3124|AAS65412.1| 1000|Drosophila melanogaster CG1391-PC...    27   8.7  
AE014298-3123|AAS65411.1| 1240|Drosophila melanogaster CG1391-PD...    27   8.7  
AE014298-3121|AAF50826.4| 1594|Drosophila melanogaster CG1391-PB...    27   8.7  

>AY128468-1|AAM75061.1| 1593|Drosophila melanogaster RE21811p
           protein.
          Length = 1593

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16  SGGLLVTYSLSTLGLALCAGIERCG-GNAFQAFICGVGSALFAVNAATIWRRWR 68
           +GG +V  ++S  GLA     +  G G+A      G GS   AV A+T  ++W+
Sbjct: 878 TGGSIVPRNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQ 931


>AE014298-3124|AAS65412.1| 1000|Drosophila melanogaster CG1391-PC,
           isoform C protein.
          Length = 1000

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16  SGGLLVTYSLSTLGLALCAGIERCG-GNAFQAFICGVGSALFAVNAATIWRRWR 68
           +GG +V  ++S  GLA     +  G G+A      G GS   AV A+T  ++W+
Sbjct: 285 TGGSIVPRNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQ 338


>AE014298-3123|AAS65411.1| 1240|Drosophila melanogaster CG1391-PD,
           isoform D protein.
          Length = 1240

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16  SGGLLVTYSLSTLGLALCAGIERCG-GNAFQAFICGVGSALFAVNAATIWRRWR 68
           +GG +V  ++S  GLA     +  G G+A      G GS   AV A+T  ++W+
Sbjct: 525 TGGSIVPRNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQ 578


>AE014298-3121|AAF50826.4| 1594|Drosophila melanogaster CG1391-PB,
           isoform B protein.
          Length = 1594

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16  SGGLLVTYSLSTLGLALCAGIERCG-GNAFQAFICGVGSALFAVNAATIWRRWR 68
           +GG +V  ++S  GLA     +  G G+A      G GS   AV A+T  ++W+
Sbjct: 879 TGGSIVPRNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQ 932


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,201,893
Number of Sequences: 52641
Number of extensions: 130016
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 4
length of query: 120
length of database: 24,830,863
effective HSP length: 76
effective length of query: 44
effective length of database: 20,830,147
effective search space: 916526468
effective search space used: 916526468
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)