GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024755-4|AAK84603.1|  225|Caenorhabditis elegans Hypothetical ...    26   6.2  

>AC024755-4|AAK84603.1|  225|Caenorhabditis elegans Hypothetical
           protein Y34B4A.9 protein.
          Length = 225

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 47  FICGVGSALFAVNAATIWRRWRNVDDLTR 75
           F+CG G   + +N   +   WR+  D+ R
Sbjct: 121 FVCGAGLQTYLLNEGCMSTTWRSQSDVLR 149


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,928
Number of Sequences: 27539
Number of extensions: 60393
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 1
length of query: 120
length of database: 12,573,161
effective HSP length: 73
effective length of query: 47
effective length of database: 10,562,814
effective search space: 496452258
effective search space used: 496452258
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)