GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002108-TA|BGIBMGA002108-PA|undefined
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   6.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   8.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 4   RSVRVFRWEQSVSGGLLVTYSLSTLGLAL 32
           R V  FR+E+ +   L+ T++ STL + L
Sbjct: 188 RLVVFFRFERQIGHHLIQTFAPSTLVVML 216


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
          protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 39 CGGNAFQAFICGVGSALFAVNAAT 62
          CG N    F C +   L  V A T
Sbjct: 48 CGPNVINPFFCDMSPLLSLVCADT 71


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 39 CGGNAFQAFICGVGSALFAVNAAT 62
          CG N    F C +  +L  + A T
Sbjct: 49 CGPNVINPFFCDMSPSLSLLCADT 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,626
Number of Sequences: 429
Number of extensions: 609
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.3 bits)
S2: 39 (19.8 bits)