GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002107-TA|BGIBMGA002107-PA|undefined
         (787 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   6.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   6.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   8.1  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 368 DPSLESPLTPKNYGYMELVDDD 389
           + +LE+P +P+N+   EL D D
Sbjct: 31  ETALEAPKSPENHPETELSDSD 52


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 20/84 (23%), Positives = 32/84 (38%)

Query: 464 SEKQTSDSITNVSSTPELKIGRLSLSEVSSPIDKVDKTESLEEASPPLISESTMSSIVPN 523
           S K  S ++    ST +      S  +V+SP          +  + P+I  +   +I  N
Sbjct: 34  SNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQFPATPVIDPAKDPAIYSN 93

Query: 524 SIPFSGSSSIRLYSPAICRSASET 547
            +P  GS+     S       SET
Sbjct: 94  LLPRPGSNDNSWESLIEVTKTSET 117


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 462 STSEKQTSDSITNVSSTP-ELKIGRLSLSEVSSP-IDKVDKTESLEEASPPLISESTMSS 519
           S  + +++  +T  S TP  +     + S  SSP +              P +  ST S+
Sbjct: 141 SKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGST 200

Query: 520 IVPN--SIPFSGSSSIRLYSPAICRSASETFHRS 551
             P   S  ++ S++  ++SPA   S +   HRS
Sbjct: 201 SSPTIASATYTNSANSSIWSPASIDSFTLEQHRS 234


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,775
Number of Sequences: 317
Number of extensions: 5076
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 787
length of database: 114,650
effective HSP length: 62
effective length of query: 725
effective length of database: 94,996
effective search space: 68872100
effective search space used: 68872100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)