GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002107-TA|BGIBMGA002107-PA|undefined
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    36   0.079
At4g13240.1 68417.m02059 hypothetical protein contains Pfam prof...    32   1.3  
At5g13720.1 68418.m01597 expressed protein                             31   3.0  
At5g11430.1 68418.m01335 transcription elongation factor-related...    31   3.9  
At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase, puta...    31   3.9  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    30   5.2  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    30   5.2  
At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase h...    30   5.2  
At3g23540.1 68416.m02962 expressed protein ; expression supporte...    30   6.8  

>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 454 TDTDPSDRSTSEKQTSDSITNVSSTPELKIGRLSLSEVSSPIDKVDKTESLEEASPPLIS 513
           +D+   D S+S   + DS ++VSS+P+      S  + SS +     + S E +S P  S
Sbjct: 453 SDSSSPDSSSSVSSSPDSSSSVSSSPDSYSSFSSSPDSSSSVSSSLFSSSRENSSSPDYS 512

Query: 514 ESTMSSIVPNSIPFSGS-SSIRLYSPAICRSASET 547
            S     V +S+ +SGS SS   YS ++  SA+ +
Sbjct: 513 NS-----VSSSLDYSGSVSSSSDYSSSVFPSANSS 542



 Score = 31.9 bits (69), Expect = 1.7
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 456 TDPSDRSTSEKQTSDSITNVSSTPELKIGRLSLSEVSSPIDKVDKTESLEEASPPLISES 515
           T  S  S+S K TS   T VSS+P+     LSLS  +        + S + +S    S  
Sbjct: 413 TTSSPVSSSAKTTS---TPVSSSPDTSSFLLSLSLAADSSSSDSDSSSPDSSSSVSSSPD 469

Query: 516 TMSSIVPNSIPFSGSSSIRLYSPAICRSASETFHRSNSRNLESP 559
           + SS+  +   +S  SS    SP    S S +   S+  N  SP
Sbjct: 470 SSSSVSSSPDSYSSFSS----SPDSSSSVSSSLFSSSRENSSSP 509


>At4g13240.1 68417.m02059 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 517

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 297 ESGVLDDCGFDEKDDRKRSKNPRTLSGPKLVHEAKNISAVASHVCGKTSPTEPVVYSNAL 356
           E   +DD  + +   RK+     T  G K+  E  + SA +S+  G+         S+  
Sbjct: 408 EMSRIDDVLYADSLARKQCTGEETSDGGKIATETDSASAGSSNYSGEEIEKLESQNSSKT 467

Query: 357 EHFEF------ADEGEQDPSLESP-LTPKNYGYMELVDDDYAYSPSKDR 398
              +F      + +G+ +   +SP +TPK   Y+E +++   +   KDR
Sbjct: 468 TLLDFIGWSDNSSKGQSEKPPKSPRMTPKKLSYLEKLENLNGFRSPKDR 516


>At5g13720.1 68418.m01597 expressed protein
          Length = 262

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 506 EASPPLISESTMSSIVPNSIPFSGSSSIRLYSPAICRSASETFHRSNSRNLE 557
           ++SPP   ES+ SS +P SIP +G++    Y      S    F RS   N+E
Sbjct: 36  DSSPP---ESSASSSIPTSIPVNGNTLPSSYGTRKDDSPFAQFFRSTESNVE 84


>At5g11430.1 68418.m01335 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 871

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 455 DTDPSDRSTSEKQTSDSITNVSSTPELKIGRLSLSEVSSPIDKVDKTESLEEASPPLIS- 513
           + + S RS   +  + ++  V    +   G+ ++  V +P+   + T+S + ASP  IS 
Sbjct: 104 EVNESVRSKMRESLASALALVKKDDDSPKGKENIGTVETPVITQENTQSFQPASPASISV 163

Query: 514 ---ESTMSSIVPNSIPFS 528
              E TMS  +P S+  S
Sbjct: 164 PVGEGTMSE-MPTSVESS 180


>At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GI:6715257 from
           [Phaseolus vulgaris]
          Length = 589

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 15/71 (21%), Positives = 34/71 (47%)

Query: 350 VVYSNALEHFEFADEGEQDPSLESPLTPKNYGYMELVDDDYAYSPSKDRSMNFIEKTFSE 409
           VV    L++F+F+ EGE+ P +E PL      +   + +++   P +       +    +
Sbjct: 304 VVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKLSDMFLGK 363

Query: 410 TVLKPASQEVS 420
           + +K   +++S
Sbjct: 364 SPVKYDGEKIS 374


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 440 PQGELKSPPHC----LKYTDTDPSDRSTSEKQTSDSITNVSSTPELKIGRLSLSEVSSPI 495
           P G+L +PP      +  + + P+    S   T  S+ + S++P    G L  S   +P 
Sbjct: 622 PAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPA--GHLG-SPSDTPS 678

Query: 496 DKVDKTESLEEASPPLISESTMSSIVPNSIPFSGSSSIRLYSPAICRSAS 545
             V  T S   ++ P  S S   S  P++ P +  S+    SP+   SAS
Sbjct: 679 SVV--TPSASPSTSPSASPSVSPSAFPSASPSASPSASPSVSPSASPSAS 726


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
           to cDNA putative transcription factor (HUA2) GI:4868119;
           contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 74  LSRTRSAGGLATKRALELKRKYLLGEPSPPAVRKSDSTSQIDNKFEAF 121
           LSRTR + G AT+ A++  +  L  E     +RK +S S    K + F
Sbjct: 786 LSRTRESIGRATRLAIDCAKYGLASEVVELLIRKLESESHFHRKVDLF 833


>At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase
           hisHF, chloroplast / IGP synthase / ImGPP synthase /
           IGPS identical to SP|Q9SZ30 Imidazole glycerol phosphate
           synthase hisHF, chloroplast precursor (IGP synthase)
           {Arabidopsis thaliana}
          Length = 592

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 518 SSIVPNSIPFSGSSSIRLYSPAICRSASETFHRSNSRNLESPRS 561
           SSIV +   FS SSSIR  SPA    + ++    N R  +SPRS
Sbjct: 9   SSIVSSRQNFSSSSSIRASSPASLFLSQKSIGNVN-RKFKSPRS 51


>At3g23540.1 68416.m02962 expressed protein ; expression supported
           by MPSS
          Length = 568

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 470 DSITNVSSTPELKIGRLSLSEV---SSPIDKV-DKTESLEEASPPLISESTMSSIVPNSI 525
           +++  +SS  E    R + SE    SSP+ +  D+  S  E++PP  + S+++  V +S+
Sbjct: 459 NAVQCISSREESTSTRANQSETDSASSPVTRSQDQLPSSSESNPPSETSSSLARTVTSSV 518

Query: 526 PFSGSSSIRLYSPAICRSASETFHRSNS 553
           P S S             A+ T  RS+S
Sbjct: 519 PGSLSQKESETGDVPGTKATVTVERSSS 546


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,993,143
Number of Sequences: 28952
Number of extensions: 572358
Number of successful extensions: 1267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 12
length of query: 787
length of database: 12,070,560
effective HSP length: 87
effective length of query: 700
effective length of database: 9,551,736
effective search space: 6686215200
effective search space used: 6686215200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 63 (29.5 bits)