Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0055 - 375343-375567,375672-377540 31 0.11
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812... 29 0.46
08_01_0918 + 9043949-9045625 27 3.2
08_01_0074 + 530207-532603 27 3.2
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 27 3.2
10_08_0537 - 18625440-18626804 26 4.3
11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619 26 5.6
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348... 25 7.5
06_02_0106 - 11898493-11901471 25 7.5
06_01_1064 - 8609162-8610583 25 7.5
06_01_1060 + 8522131-8523606 25 7.5
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 25 7.5
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 25 9.9
>08_01_0055 - 375343-375567,375672-377540
Length = 697
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 33 ITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREIC 73
+ T+M P+C + + +CS+G K+ +G+ +++C
Sbjct: 264 VFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC 304
>02_02_0433 -
10178497-10178844,10180394-10180444,10181201-10181263,
10181427-10181471,10181772-10181816,10183894-10183923,
10184182-10184289,10186459-10186524,10186595-10186624,
10187147-10187501,10189323-10189345,10191421-10191447,
10192131-10192210,10192367-10192550
Length = 484
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 8 LSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPTPP 44
+ +R+RGL LV + N+ S + I T ++ P PP
Sbjct: 341 MDLRSRGLCLVPKYTTGNLLCSCRKIATPVDMDPNPP 377
>08_01_0918 + 9043949-9045625
Length = 558
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 33 ITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREICA 74
+ +M P+C + +CS+G K+ +G+ ++C+
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCS 304
>08_01_0074 + 530207-532603
Length = 798
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 44 PECALAAEMFDHFCSAGTMKQILGLHREIC 73
P C + +CS+G K+ +G+ R++C
Sbjct: 239 PNCITYNCLLHGYCSSGKPKEAIGIFRKMC 268
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 28 FSLKSITTKMNT-GPTPPECALAAEMFDHFCSAGTMKQIL 66
F L + TT P PPE A + + DHF S G + ++
Sbjct: 741 FKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVV 780
>10_08_0537 - 18625440-18626804
Length = 454
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 44 PECALAAEMFDHFCSAGTMKQILGLHREICA 74
P C + +CS+G ++ +G+ R++C+
Sbjct: 75 PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCS 105
>11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619
Length = 260
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 29 SLKSITTKMNTGPTP-----PECALAAEMFDHFC 57
SL + NTG TP P A AA DHFC
Sbjct: 38 SLVTFKFNTNTGRTPLLETMPSLATAAVRLDHFC 71
>12_01_0441 +
3484003-3484374,3485071-3485151,3485242-3485514,
3485695-3485826,3485903-3486076,3486164-3486393,
3486562-3486679,3486717-3486743,3486948-3487079,
3487189-3487323,3487393-3487599,3487772-3487936
Length = 681
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 58 SAGTMKQILGLHREICATLNLIPTRLPDFYPK 89
S G K ++ HR + ATL+ + T +P+ K
Sbjct: 237 STGLPKGVMMTHRNVLATLSAVMTIVPEIGKK 268
>06_02_0106 - 11898493-11901471
Length = 992
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 56 FCSAGTMKQILGLHREICA 74
F G +++LGL+RE+CA
Sbjct: 119 FSDHGFHRELLGLYREVCA 137
>06_01_1064 - 8609162-8610583
Length = 473
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 24 DNVAFSLKSITTKMNTGPTPPECALAAEMFDHFC-SAGTMKQILGLHREIC 73
+ + F+L I K +G P F+HFC AG I L R +C
Sbjct: 334 EQLKFALAFIARKALSGRVKPYIPDFRAAFEHFCIHAGGRAVIDELQRSLC 384
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 24 DNVAFSLKSITTKMNTGPTPPECALAAEMFDHFC-SAGTMKQILGLHREIC 73
+ + F+L I K +G P F+HFC AG I L R +C
Sbjct: 352 EQLKFALAFIARKALSGRVKPYIPDFRAAFEHFCIHAGGRAVIDELQRSLC 402
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 4 QSIKLSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMK 63
+ I ++VR R L + +KD VA+ T + GP A + FD +
Sbjct: 33 EKIFVTVRVRPLSKKELALKDQVAWECDDNQTILYKGPPQDRAAPTSYTFDKVFGPASQT 92
Query: 64 QIL 66
+++
Sbjct: 93 EVV 95
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 14 GLRLVKREIKDNVAFSLKSITTKMNTGPTPPE 45
GL + R I D + +K+ TT++ +GP P E
Sbjct: 333 GLGIAPRSIGDLIGV-VKAYTTRVGSGPFPTE 363
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,851
Number of Sequences: 37544
Number of extensions: 96361
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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