GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
         (99 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   1.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   3.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           20   4.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   9.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 19 KREIKDNVAFSLKSITTK 36
          K EIK  ++FS++S+ +K
Sbjct: 5  KTEIKSKISFSVESLLSK 22


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 14  GLRLVKREIKDNVAFSLKSITTKMNT 39
           G+++VK+  KD    + KS ++  +T
Sbjct: 369 GMKIVKKRRKDKREITRKSTSSSTHT 394


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 32  SITTKMNTGPTPP 44
           S T  ++T PTPP
Sbjct: 136 STTDDLSTNPTPP 148


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 3   YQSIKLSVRARGLRLVKREI--KDNVAFSLKSITTKMNTGPTPP 44
           Y   K  +    L+L + ++  KD+ + +L+++ T+     TPP
Sbjct: 97  YPENKTLINETSLQLDENKLDKKDDDSPALRALLTRPQAKKTPP 140


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
          protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 68 LHREICATLNLIPT 81
          LH  +CA L L PT
Sbjct: 4  LHITLCAFLILTPT 17


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,383
Number of Sequences: 317
Number of extensions: 779
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 114,650
effective HSP length: 48
effective length of query: 51
effective length of database: 99,434
effective search space:  5071134
effective search space used:  5071134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)