GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   0.53 
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   2.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   2.8  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   2.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    23   6.5  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    23   6.5  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    23   8.6  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 14  GLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREIC 73
           GL +  + I +++   +K+ TT++  GP P E     E+ DH  S G    +    +  C
Sbjct: 260 GLGVPPQRIANSIGV-VKAYTTRVGAGPFPTE--QLNEIGDHLQSVGREVGVTTGRKRRC 316

Query: 74  ATLNLI 79
             L+L+
Sbjct: 317 GWLDLV 322


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 4   QSIKLSVR--ARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECA 47
           + IKL+V+     +RLV   I D+ + ++KSI       PT  E A
Sbjct: 231 KDIKLAVKHYLAAIRLVNSGIPDSPSEAIKSIHNNPRHAPTTKETA 276


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
          Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 81 TRLPDFYPKLKVRPENSH 98
          TR+P+F P+ ++R   +H
Sbjct: 42 TRIPEFQPRRRIRTSRNH 59


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 23  KDNVAFSLKSIT------TKMNTGPTPPECALAAEMFDHFC 57
           K+NVAF LK+ T       K  T PT P C    E  D  C
Sbjct: 542 KENVAFPLKTTTKPMPKVNKEETEPTLPVCDSEKENDDLEC 582


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 18  VKREIKDNVAFSLKSITTKMNTGPTP 43
           V RE++D     + + ++K NT P+P
Sbjct: 506 VNRELQDEGRLEIDAKSSKTNTPPSP 531


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 58 SAGTMKQILGL----HREICATLNLIPTRLPDFYP 88
          S G +K+  G     HR + ATL+  P R+   YP
Sbjct: 2  STGQLKRFKGCEYLTHRLVLATLSGTPIRVEGIYP 36


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 53  FDHFCSAGTMKQILGLHREICAT 75
           F +FC     KQI   HR I ++
Sbjct: 239 FRNFCKIDASKQITNYHRRILSS 261


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,121
Number of Sequences: 5004
Number of extensions: 14646
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)