GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.4  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    26   4.4  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    25   7.7  

>SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 23  KDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREICATLNLIPT 81
           K  +A+S     T +  G  PP   L A+    + SA  M  I+ L   + A + L+PT
Sbjct: 302 KAAIAYSQAVTVTAIFQGAGPPVAGLMADQSGSYTSAFYMSGIVLL---VAAAVRLVPT 357


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 13   RGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHRE 71
            RG R +  +  + V  +LKS+  KM+T    P  A++ ++F +     +   I  L  E
Sbjct: 1151 RGRRSILTDDINRVESNLKSLNKKMDTRKHAPSGAVSVKVFGNEMRLASFDDISWLQSE 1209


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 33   ITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHR 70
            +T  +    T  E AL   +FD FC        LGL+R
Sbjct: 1029 VTQGLQAASTTFERALVPPVFDGFCREALWLAYLGLYR 1066


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,015
Number of Sequences: 59808
Number of extensions: 109316
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 3
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)