GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
         (99 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    25   9.0  

>U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical
           protein T12A2.8 protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 61  TMKQI-LGLHREICATLNLIPTRLPDFYPKLK 91
           T K++ L + R++  T  +  TR+PDF+   K
Sbjct: 332 TQKELALSIRRKVHLTTTVAQTRIPDFFAATK 363


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 2   SYQSIKLSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCS 58
           SY+    ++R   L+L K  +  NV+F  K      N G    +   AAE+    C+
Sbjct: 360 SYEDAWAAMRLAQLKLEKGLMFGNVSFGWKYSEYAKNNGAVEKKIVTAAEITSKPCT 416


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,260
Number of Sequences: 27539
Number of extensions: 84419
Number of successful extensions: 173
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 12,573,161
effective HSP length: 70
effective length of query: 29
effective length of database: 10,645,431
effective search space: 308717499
effective search space used: 308717499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)