GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.075
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.075
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    25   0.23 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   4.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.075
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 2   SYQSIK--LSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFC-S 58
           ++++IK   +V   G  LV++   D + +++ S        P      L   MF  FC  
Sbjct: 21  TWEAIKKDAAVNMEGQFLVRQIYDDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQD 80

Query: 59  AGTMK--QILG-LHREICATLNLIPTRLPDFYPKLK 91
           +G  K  Q+LG   R+    L+ +   L   YP ++
Sbjct: 81  SGYDKILQVLGATPRDFLQNLDALHDHLGTLYPGMR 116


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.075
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 2   SYQSIK--LSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFC-S 58
           ++++IK   +V   G  LV++   D + +++ S        P      L   MF  FC  
Sbjct: 21  TWEAIKKDAAVNMEGQFLVRQIYDDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQD 80

Query: 59  AGTMK--QILG-LHREICATLNLIPTRLPDFYPKLK 91
           +G  K  Q+LG   R+    L+ +   L   YP ++
Sbjct: 81  SGYDKILQVLGATPRDFLQNLDALHDHLGTLYPGMR 116


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 0.23
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 63 KQILGLHREICATLNL 78
          ++I+GLH  +C +LNL
Sbjct: 19 EKIIGLHNNMCTSLNL 34


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 24 DNVAFSLKSITTKMNTGPTPPEC 46
          DNV     +   K N  P P EC
Sbjct: 18 DNVTMPETTPRRKKNKKPLPTEC 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,480
Number of Sequences: 429
Number of extensions: 955
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)