Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002106-TA|BGIBMGA002106-PA|undefined
(99 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21222.1 68418.m02532 protein kinase family protein contains ... 31 0.13
At5g61400.1 68418.m07703 pentatricopeptide (PPR) repeat-containi... 28 1.2
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 26 3.7
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a... 26 4.8
At1g20570.1 68414.m02565 tubulin family protein 26 4.8
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 25 6.4
At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putati... 25 6.4
At1g80260.1 68414.m09396 tubulin family protein 25 6.4
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 25 6.4
At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containi... 25 8.5
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 25 8.5
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 31 KSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREICATLNLIP 80
+ I +M P + ++ +CSAG MK+ + +++++C + L P
Sbjct: 656 EQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSP 705
>At5g61400.1 68418.m07703 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 654
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 23 KDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREICATLNLIP 80
+DN + + M P + M D +C G ++Q GL++EI L+P
Sbjct: 246 RDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVA-ELLP 302
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 58 SAGTMKQILGLHREICATLNLIPT 81
S + +I+ LH E C +L +IPT
Sbjct: 667 SVANLHKIVNLHMESCESLEVIPT 690
>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
anther-specific protein ATA27 contains Pfam PF00232 :
Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
6-phospho-beta-galactosidase; identical to
anther-specific protein ATA27 (GI:2746341) [Arabidopsis
thaliana]
Length = 535
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 7 KLSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPT--PPECALAAEMFDHFCSAGTMKQ 64
K+ V A+GLR + + IKD + + + T+ G + +L + D + K
Sbjct: 396 KVEVYAKGLRSLLKYIKDKYG-NPEIMITENGYGEDLGEQDTSLVVALSDQHRTYYIQKH 454
Query: 65 ILGLHREIC 73
+L LH IC
Sbjct: 455 LLSLHEAIC 463
>At1g20570.1 68414.m02565 tubulin family protein
Length = 976
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 18 VKREIKDNVAFSLKSITTKMNTGPTP 43
++++ +D +AF L+ +T+K N G P
Sbjct: 923 IEKQFEDCIAFLLRVLTSKKNVGHFP 948
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 7 KLSVRARGLRLVKREIKDNVAFSLKSITTKMNTGPT--PPECALAAEMFDHFCSAGTMKQ 64
K++V A+GLR + + IKD S + I T+ G + L+ + DH +
Sbjct: 390 KMAVYAKGLRKLMKYIKDRYN-SPEIIITENGYGEDLGDKDTDLSVALNDHNRKYYLQRH 448
Query: 65 ILGLHREIC 73
+L L+ IC
Sbjct: 449 LLALNEAIC 457
>At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:2723477 from
[Arabidopsis thaliana] ;contains Pfam profile: PF00071
Ras family
Length = 205
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 55 HFCSAGTMKQILGLHREICATLNLIPTRLPDFYPKLKVRPE 95
H CSA T + + G E+ + +P+ L + +K +P+
Sbjct: 154 HECSARTRENVNGCFEELALKIMEVPSLLEEGSSSVKRKPD 194
>At1g80260.1 68414.m09396 tubulin family protein
Length = 951
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 18 VKREIKDNVAFSLKSITTKMNTGPTP 43
++++ +D +AF L+ +++K+N G P
Sbjct: 884 IEKQFEDCIAFLLRVLSSKLNVGHFP 909
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 12 ARGLRLVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHRE 71
A+GL+++ ++ ++AF++ ++ K P+PP E F + + L E
Sbjct: 262 AKGLKVMVGQL--SIAFNISALCRKGTVHPSPPPAIKTDEQFLSLLPVAILSLVAALSVE 319
Query: 72 ICATLNLIPTRLPDF--YPKLKVRPENSH 98
L + + D +LK E++H
Sbjct: 320 DREVLAYLISNSGDSNRISRLKKNKEDNH 348
>At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 745
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 17 LVKREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSAGTMKQILGLHREICATL 76
L+ K + I ++MN P+ + D +C AG + + L L ++C
Sbjct: 213 LINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQK- 271
Query: 77 NLIPT 81
++PT
Sbjct: 272 EVVPT 276
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 19 KREIKDNVAFSLKSITTKMNTGPTPPECALAAEMFDHFCSA 59
KRE +DN + L ++ +K+N G AAE C A
Sbjct: 889 KREAEDNCSRKLGALFSKLNNGDISKN---AAEKLTQLCQA 926
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,977
Number of Sequences: 28952
Number of extensions: 77368
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 12,070,560
effective HSP length: 70
effective length of query: 29
effective length of database: 10,043,920
effective search space: 291273680
effective search space used: 291273680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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