GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002105-TA|BGIBMGA002105-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR009091|Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II
         (480 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.67 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   2.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.6  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   6.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 201 TTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDG 254
           T   + KP  ++ +G+ + KV C   F   L  + + + FG      L  N +G
Sbjct: 380 TVSSVSKPEALRLSGSVVTKVTCEL-FQATLSSSSDTNRFGTSGLAWLYLNNEG 432


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 278 IQKSKDGYITPVKDVTIVDLSCGNNHTVAI 307
           I + +   ++ + + T+ DL+ G N+TV I
Sbjct: 204 IYEERISVVSGLHEATLTDLALGENYTVQI 233


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 380 NMYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINK-STAKPKE 438
           N  P   +DL+G N+    +  +S++   +  L    +    G+L M E N  S    + 
Sbjct: 456 NWNPSAQNDLSGVNLSETPSGISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETFTQN 515

Query: 439 VSRMD 443
           +S MD
Sbjct: 516 LSLMD 520


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
          protein 20 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 45 QSKPSTPEPEECTTKLPEEL 64
          + KP TP+ EE    LP+ L
Sbjct: 51 EKKPCTPDGEELKRVLPDAL 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,507
Number of Sequences: 317
Number of extensions: 5420
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 114,650
effective HSP length: 59
effective length of query: 421
effective length of database: 95,947
effective search space: 40393687
effective search space used: 40393687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)