Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002105-TA|BGIBMGA002105-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR009091|Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 69 2e-12
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 53 1e-07
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 50 7e-07
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 29 1.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 29 1.9
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 29 1.9
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 28 3.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 7.7
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 68.5 bits (160), Expect = 2e-12
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 27/248 (10%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRHHTLFVTD 181
H + ++ G+ YT+G QLG R + L P+ L KNII G +H+ + +
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDN 296
Query: 182 TGCVYACGDNKSGQCGLGNTTPQ----ILKPTRI-KYNGTPIVKVGCGAEFSMILDCNGN 236
G VYA G N + QCG+ + I KPT + G + + G ++ L +G
Sbjct: 297 KGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGR 356
Query: 237 LHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYI-TP--VKDVT 293
+ ++G + QLG + L ET+ K +K + Y+ TP + +T
Sbjct: 357 VLAWGRDDRHQLG--------IPDNALP---ETVVKD-----EKGNNYYLSTPTIIPGLT 400
Query: 294 -IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAE-QKDENVPRLIKYFDTVGRGVRSV 351
++ + CG +H +A+ S + +SWG +G + +D VP L++ +R
Sbjct: 401 NVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAIRVA 460
Query: 352 HCGGTYSL 359
GG +S+
Sbjct: 461 GAGGQFSI 468
Score = 54.0 bits (124), Expect = 4e-08
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 21/155 (13%)
Query: 114 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNI 166
+I G + HS + +G Y +G N Q G G +T+ P LV L+G N+
Sbjct: 281 IISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITK--PTLVDALEGYNV 338
Query: 167 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGL-GNTTPQ-ILKPTRIK--YNGTP----- 217
G HHTL + + G V A G + Q G+ N P+ ++K + Y TP
Sbjct: 339 KSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPG 398
Query: 218 ---IVKVGCGAEFSMILDCNGNLHSFGMPEYGQLG 249
+++V CG ++ + +G ++S+G E ++G
Sbjct: 399 LTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVG 433
Score = 51.6 bits (118), Expect = 2e-07
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 116 VSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGD-----TVTR---------SVPELVP 159
V T G H++ + E+G +GR+ QLG D TV + S P ++P
Sbjct: 338 VKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIP 397
Query: 160 ELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIV 219
L N+I G HH L VT G VY+ G ++ + G G+ + PT ++ V
Sbjct: 398 GLT--NVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEV 455
Query: 220 KV---GCGAEFSMI 230
+ G G +FS+I
Sbjct: 456 AIRVAGAGGQFSII 469
Score = 48.8 bits (111), Expect = 2e-06
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 35/311 (11%)
Query: 126 LVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNI--IHAAVGRHHTLFVTD 181
L +E Y FG + +LG G+ V P L P L + + AVG H+ ++
Sbjct: 66 LPTERLNVYVFGSGSMNELGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSH 125
Query: 182 TGCVYACGDNKSGQCGLGNTTPQILKPTRIKYN---GTPIVKVGCGAEFSMI-LDCNGNL 237
G VY G N G + ++ + GTP G + + + C+ NL
Sbjct: 126 DGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNL 185
Query: 238 HSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDL 297
+ +G F T F + + + T ++ I L
Sbjct: 186 TA---------AITDNGCCFTWGT-----FRCSDGVLGYSDSQKRTAEPTQMRLPEICQL 231
Query: 298 SCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTY 357
+ G +H +A+ + + ++WG G +LG + + L + + SV G +
Sbjct: 232 ATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQ-PLALKNIISVGAGSYH 290
Query: 358 SLAVNDQGALFMFGQ--TKRTG-------EANMYPKP--VHDLTGWNIKSV-GTSNTSIV 405
S A++++G ++ +G T++ G E + KP V L G+N+KS+ G + ++
Sbjct: 291 SFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLA 350
Query: 406 IAADDSLIAWG 416
+ D ++AWG
Sbjct: 351 LLEDGRVLAWG 361
Score = 48.8 bits (111), Expect = 2e-06
Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 68/354 (19%)
Query: 123 HSVLVSEEGEAYTFGRN---ACGQL------GFGDTVTRSVPELVPELKGKNIIHAAVGR 173
HS +S +G YT+G N A G+L GD V + E P + H V +
Sbjct: 119 HSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTK 178
Query: 174 -----HHTLFVTDTGCVYACGDNK--SGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAE 226
+ T +TD GC + G + G G ++ + +PT+++ I ++ G +
Sbjct: 179 VICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRL--PEICQLATGTD 236
Query: 227 FSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYI 286
+ L G ++++G + QL G+ + +L P+ + L
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQL-----GRRMLERRRLQ---GLTPQPLAL---------- 278
Query: 287 TPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLG-HAEQKDENV----PRLIKYF 341
I+ + G+ H+ AID+ R ++WG + G E ++E P L+
Sbjct: 279 -----KNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDAL 333
Query: 342 DTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKRTG---EANMYPKP-VHDLTGWN---- 393
+ G V+S+ G ++LA+ + G + +G+ R N P+ V D G N
Sbjct: 334 E--GYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLS 391
Query: 394 -----------IKSVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKP 436
I+ V ++ ++ + +D + +WG + Y E+G G+ ++ A P
Sbjct: 392 TPTIIPGLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENY-EVGQGDNDEDVAVP 444
Score = 35.9 bits (79), Expect = 0.012
Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 35/298 (11%)
Query: 185 VYACGDNKSGQCGLGNTTPQILKPTRIK----YNGTPIVKVGCGAEFSMILDCNGNLHSF 240
VY G + G+G ++ R+ + +V + G S L +G ++++
Sbjct: 73 VYVFGSGSMNELGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSHDGRVYTW 132
Query: 241 GMPEYGQLGHNTDGKYFVTSTKLSFHF-ETIPKQITLYIQKSKDGYITPVKDVTIVDLSC 299
G+ + LG T + K+ E P ++ +G ++ ++ ++ C
Sbjct: 133 GVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKV--------EGALSHLRVTKVI---C 181
Query: 300 GNNHTVAIDSMKRAFSWGFG--GFGRLGHAE-QKDENVPRLIKYFDTVGRGVRSVHCGGT 356
+N T AI F+WG G LG+++ QK P ++ + + + G
Sbjct: 182 SDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPE-----ICQLATGTD 236
Query: 357 YSLAVNDQGALFMFG--QTKRTGEANMYPKPVHDLTGW-----NIKSVGT-SNTSIVIAA 408
+ +A+ G ++ +G Q + G + + + LT NI SVG S S I
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDN 296
Query: 409 DDSLIAWGVSPTYG---ELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDN 463
+ AWG++ T E+ E KP V ++ + + G HTL L ++
Sbjct: 297 KGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLED 354
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 52.8 bits (121), Expect = 1e-07
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 102 YTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG------DTVTRSVP 155
Y F +++I + HS+ +++ G Y++G+N G+LG D + P
Sbjct: 237 YNFIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITP 296
Query: 156 ELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNG 215
+ K II A G+ +++ TDT +Y+ G N +GQ G+ + + P R+
Sbjct: 297 RRISAFKDYQIIGMAAGKSYSVAWTDTD-IYSWGLN-NGQLGISDHISVVSTPRRVAGLL 354
Query: 216 TPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFH 266
+P++ C ++ L N ++ +F +L N D F +S K++ H
Sbjct: 355 SPVIHAVCTTRATICLLQNNSIIAFCNYNQVKLPFNVD---FGSSLKVTKH 402
Score = 49.2 bits (112), Expect = 1e-06
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 123 HSVLVSEEGE--AYTFGRNACGQLGFGDTVTRS-VPELVPELKGKNIIHAAVGRHHTLFV 179
HSV++++E Y G A G++GF V + +P +P + K +I +V H+L +
Sbjct: 206 HSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIP--IPGIIHK-VIQISVSHTHSLAL 262
Query: 180 TDTGCVYACGDNKSGQCGLGN-----TTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDC 233
T G +Y+ G N SG+ GL N P + P RI + I+ + G +S +
Sbjct: 263 TKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKDYQIIGMAAGKSYS-VAWT 321
Query: 234 NGNLHSFGMPEYGQLG 249
+ +++S+G+ GQLG
Sbjct: 322 DTDIYSWGL-NNGQLG 336
Score = 37.5 bits (83), Expect = 0.004
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 43/212 (20%)
Query: 132 EAYTFGRNACGQLGFGDTVTRSVPELVPELKGK-------------NIIHAAVGRHHTLF 178
E Y FG N LG + S PE V LK + I+ + H++
Sbjct: 150 ELYGFGTNVNNTLGIANGKEPSSPERVFLLKNQTESPTSGQLFSRDKILDVQASKFHSVV 209
Query: 179 VTD--TGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGN 236
+TD + VY CG G+ G T ++YN PI G +I +
Sbjct: 210 LTDEPSQNVYVCGIGAGGRIGFN---------TDVQYNFIPIP----GIIHKVIQISVSH 256
Query: 237 LHSFGMPEYGQL---GHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVT 293
HS + ++G + G N G+ +++ +L + P QIT I+ KD
Sbjct: 257 THSLALTKFGSIYSWGKNGSGELGLSNDELK---KDDPIQIT-------PRRISAFKDYQ 306
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLG 325
I+ ++ G +++VA +SWG G+LG
Sbjct: 307 IIGMAAGKSYSVAWTDTD-IYSWGLNN-GQLG 336
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 50.0 bits (114), Expect = 7e-07
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 135 TFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSG 194
+ G N QLG + P++VP + I + G +HTL + + ++ACGDN+ G
Sbjct: 4 SLGSNGNFQLGLNNDEDVYSPQIVPF--DRAIEKISCGGNHTLLLDEDSQLWACGDNRKG 61
Query: 195 QCGLGNTTP--QILKP------TRIKYNGTPIVKVGCGAEFSMILDCN-GNLHSFGMPEY 245
QCG P L P TR+ + V + CG EFS+I+ + + S G
Sbjct: 62 QCGYEVKEPLYNPLSPDYLRIFTRVSHERW--VFLTCGWEFSVIVHADRRRVCSCGEGLS 119
Query: 246 GQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTV 305
G+LG S IP Y+ + I+D+S G H +
Sbjct: 120 GELGQGN------RSNSQGLREIDIP-----YLDDKE----------FIIDISAGLRHWI 158
Query: 306 AIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQG 365
+ + + G G G+LG K N + + + ++V CG +S + + G
Sbjct: 159 CVTNEGNLYGCGDGRKGQLGPVVMKTVN---KVSFLGRI-EHAQAVVCGVQFSAVLQETG 214
Query: 366 ALFMFGQTK 374
+ + G K
Sbjct: 215 HVIVLGGEK 223
Score = 47.2 bits (107), Expect = 5e-06
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 113 RLIVSGCTAGHSVLV-SEEGEAYTFGRNACGQLGFGD-TVTRSVPEL-VPELKGKN-IIH 168
R + C SV+V ++ + G G+LG G+ + ++ + E+ +P L K II
Sbjct: 90 RWVFLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIID 149
Query: 169 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKP-TRIKYNG--TPIVKVGCGA 225
+ G H + VT+ G +Y CGD + GQ G P ++K ++ + G V CG
Sbjct: 150 ISAGLRHWICVTNEGNLYGCGDGRKGQLG-----PVVMKTVNKVSFLGRIEHAQAVVCGV 204
Query: 226 EFSMILDCNGNLHSFG 241
+FS +L G++ G
Sbjct: 205 QFSAVLQETGHVIVLG 220
Score = 41.5 bits (93), Expect = 3e-04
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFG------DTVTRSVPELVPELKGKNIIHAAVG 172
C H++L+ E+ + + G N GQ G+ + ++ + + + + G
Sbjct: 38 CGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWVFLTCG 97
Query: 173 RHHTLFV-TDTGCVYACGDNKSGQCGLGN-TTPQILKPTRIKYNGTP--IVKVGCGAEFS 228
++ V D V +CG+ SG+ G GN + Q L+ I Y I+ + G
Sbjct: 98 WEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHW 157
Query: 229 MILDCNGNLHSFGMPEYGQLG 249
+ + GNL+ G GQLG
Sbjct: 158 ICVTNEGNLYGCGDGRKGQLG 178
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 315 SWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK 374
S G G +LG +D P+++ FD R + + CGG ++L +++ L+ G +
Sbjct: 4 SLGSNGNFQLGLNNDEDVYSPQIVP-FD---RAIEKISCGGNHTLLLDEDSQLWACGDNR 59
Query: 375 R 375
+
Sbjct: 60 K 60
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 29.1 bits (62), Expect = 1.4
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 129 EEGEAYTFG---RNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCV 185
+ G AY++G RN G++ + R P + ++ I VG + + + G +
Sbjct: 76 DRGYAYSWGQQIRNYLGRVVNTNQYPRDRPGALTGKDVRSTIQVQVGGYGMYLLNENGNL 135
Query: 186 YACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGM 242
Y G N P++++ PIVK+ G EF + L G+L+ +
Sbjct: 136 YVTGVPN-------NVGPELMRDLE------PIVKIHAGREFCLALGETGHLYQVSL 179
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 265 FHFETIPKQITLYIQKSKDGY 285
+H +I KQ+ ++ Q+SK+GY
Sbjct: 239 YHVSSIEKQVAIHFQQSKEGY 259
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 353 CGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHDLTGWNIKSV 397
CGG Y+ AV G +F GQ + N P + + T I+++
Sbjct: 13 CGGPYNQAVKSGGLIFCSGQA-AVKDGNFVPGTIQEQTRLTIENL 56
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 82 SWDLTARRDNNPTKRTHPNLYTFHK 106
S ++T + D++PTKR+ P Y++ K
Sbjct: 193 STEITTQSDSSPTKRSKPFKYSYEK 217
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/57 (28%), Positives = 19/57 (33%)
Query: 2 STASRKRPLPSSSNRGKVSRRKKPLVXXXXXXXXXXXXXPPAEQSKPSTPEPEECTT 58
+T S PLPS+S S P PP S S P P T+
Sbjct: 100 TTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTS 156
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,168
Number of Sequences: 5004
Number of extensions: 101362
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 32
length of query: 480
length of database: 2,362,478
effective HSP length: 75
effective length of query: 405
effective length of database: 1,987,178
effective search space: 804807090
effective search space used: 804807090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -