GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002105-TA|BGIBMGA002105-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR009091|Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II
         (480 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   5.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   7.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 402 TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
           + + I A+     W   P  G +    +N   A  KE++ +  LG  + A  +   +LL 
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLN 349

Query: 462 DNNI 465
           +  +
Sbjct: 350 EKTL 353


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 402 TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
           + + I A+     W   P  G +    +N   A  KE++ +  LG  + A  +   +LL 
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLN 349

Query: 462 DNNI 465
           +  +
Sbjct: 350 EKTL 353


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 402 TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
           + + I A+     W   P  G +    +N   A  KE++ +  LG  + A  +   +LL 
Sbjct: 290 SKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLN 349

Query: 462 DNNI 465
           +  +
Sbjct: 350 EKTL 353


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 182 TGCVYACGDNKSGQCG 197
           TG V AC  ++ GQCG
Sbjct: 168 TGRVLACISSRPGQCG 183


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 305 VAIDSMKRAFSWGFGGFGRLG 325
           +AI SM      GFGGFG LG
Sbjct: 12  LAIFSMLVGGFGGFGGFGGLG 32


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 305 VAIDSMKRAFSWGFGGFGRLG 325
           +A+ SM      GFGGFG LG
Sbjct: 12  LAVFSMLVGGFGGFGGFGGLG 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,425
Number of Sequences: 429
Number of extensions: 6436
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 480
length of database: 140,377
effective HSP length: 60
effective length of query: 420
effective length of database: 114,637
effective search space: 48147540
effective search space used: 48147540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)