Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002105-TA|BGIBMGA002105-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR009091|Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 245 4e-65
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 120 3e-27
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 111 1e-24
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 111 1e-24
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 111 1e-24
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 104 1e-22
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 102 6e-22
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 101 1e-21
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 100 4e-21
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 99 7e-21
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 99 7e-21
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 97 2e-20
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 97 3e-20
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 97 3e-20
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 96 4e-20
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 94 2e-19
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 93 4e-19
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 93 5e-19
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 91 1e-18
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 90 3e-18
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 85 7e-17
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 81 2e-15
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 80 4e-15
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 79 8e-15
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 76 5e-14
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 69 5e-12
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 69 5e-12
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 65 1e-10
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 30 3.9
At2g06050.2 68415.m00664 12-oxophytodienoate reductase (OPR3) / ... 29 6.8
At2g06050.1 68415.m00663 12-oxophytodienoate reductase (OPR3) / ... 29 6.8
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 9.0
At3g56720.1 68416.m06309 expressed protein 29 9.0
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 9.0
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 245 bits (600), Expect = 4e-65
Identities = 140/420 (33%), Positives = 217/420 (51%), Gaps = 30/420 (7%)
Query: 73 GVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGE 132
G L+ G +WD+ +R + + R + +GC + H V + EG
Sbjct: 20 GELLFCGATAWDIIGKR-KGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGR 78
Query: 133 AYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNK 192
YT+GRN GQLG GD + R P +V L I+ AA GR+HT+ V+D G G NK
Sbjct: 79 CYTWGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNK 138
Query: 193 SGQCGLGNTTPQILKPTRIKYNGTP--------IVKVGCGAEFSMILDC--NGNLHSFGM 242
GQ GLG+ + ++ TP + V CGA+F++ L ++ + G+
Sbjct: 139 YGQLGLGSAKNGFVS---VEVESTPLPCVVSDEVTNVACGADFTVWLSSTEGASILTAGL 195
Query: 243 PEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNN 302
P+YGQLGH TD ++ + + + +E P+ I + TIV ++CG N
Sbjct: 196 PQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKA----------IASLAGETIVKVACGTN 245
Query: 303 HTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYF--DTVGRGVRSVHCGGTYSLA 360
HTVA+D ++WGFGG+GRLGH EQKDE PR I F + V + G S
Sbjct: 246 HTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRIDVFQRNNVLPPNAILSAGSANSAC 305
Query: 361 VNDQGALFMFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIAWGVSPT 420
G L+M+G+ K G+ MYPKP+ DL+GWN++ + + + + AD S I+WG
Sbjct: 306 TAGGGQLYMWGKIKNNGDDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADSSCISWG-HAQ 364
Query: 421 YGELGMG-EINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNNIEEVKQKLDTIPAFE 479
YGELG G KS+A PK+V ++ + + VA G+ H++++ D ++ +L+ + ++
Sbjct: 365 YGELGYGPNGQKSSAAPKKVDMLEGMHVMGVACGFCHSMVIVDRT--DIADRLEQLEVYD 422
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 120 bits (288), Expect = 3e-27
Identities = 95/361 (26%), Positives = 167/361 (46%), Gaps = 38/361 (10%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
++++ A HSV + ++GR GQLG GD R P + L G I+ G
Sbjct: 16 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 75
Query: 173 RHHTLFVTDTGC-VYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMI 230
HT+ + +G VY+ G G+ G GN++ + P IK +G I ++ CG +
Sbjct: 76 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLA 134
Query: 231 LDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVK 290
+ G + S+G + GQLG + T+ S +P++I + +
Sbjct: 135 VTMEGEVQSWGRNQNGQLG--------LGDTEDSL----VPQKIQAF------------E 170
Query: 291 DVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRS 350
+ I ++ G HT A+ + WG+G +G LG ++ D VP + T G +
Sbjct: 171 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT--STGGEKMSM 228
Query: 351 VHCGGTYSLAVNDQGALFMFGQTK--RTG----EANMYPKPVHDLTGWNIKSV-GTSNTS 403
V CG ++++V+ GAL+ +G +K + G E ++ P + L+ I + G +
Sbjct: 229 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 288
Query: 404 IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDN 463
+ + +D L WG + +G++G+G N P +V D + QV+ G+ HTL + +
Sbjct: 289 MALTSDGKLYGWGWN-KFGQVGVGN-NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 346
Query: 464 N 464
N
Sbjct: 347 N 347
Score = 113 bits (273), Expect = 2e-25
Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 26/254 (10%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H + V+ EGE ++GRN GQLG GDT VP+ + +G I A G HT
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 186
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLH 238
VT+ G +Y G + G GLG+ T +++ G + V CG ++ + +G L+
Sbjct: 187 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 246
Query: 239 SFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLS 298
++G +YGQLGH L H IP + ++ + +I+ +S
Sbjct: 247 TYGWSKYGQLGHG----------DLEDHL--IPHK----LEALSNSFIS--------QIS 282
Query: 299 CGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYS 358
G HT+A+ S + + WG+ FG++G D+ P +++ D + V V CG ++
Sbjct: 283 GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQKVVQVSCGWRHT 340
Query: 359 LAVNDQGALFMFGQ 372
LAV ++ +F +G+
Sbjct: 341 LAVTERNNVFAWGR 354
Score = 99.1 bits (236), Expect = 6e-21
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 42/344 (12%)
Query: 112 YRLIVSGCTAGHSVLVSEEG-EAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAA 170
++++ C A H+V S+ G E Y++G G+LG G++ P + L G I A
Sbjct: 67 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126
Query: 171 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSM 229
G H L VT G V + G N++GQ GLG+T ++ P +I+ + G I V GAE +
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAEHTA 185
Query: 230 ILDCNGNLHSFGMPEYGQ--LGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYIT 287
+ +G+L+ +G YG LG TD +P+++T S G
Sbjct: 186 AVTEDGDLYGWGWGRYGNLGLGDRTD--------------RLVPERVT-----STGG--- 223
Query: 288 PVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRG 347
+ +++V +CG HT+++ +++G+ +G+LGH + +D +P ++
Sbjct: 224 --EKMSMV--ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSF 277
Query: 348 VRSVHCGGTYSLAVNDQGALFMFGQTK--RTGEANMYPK--PVHDLTGWNIKSVGTS--- 400
+ + G +++A+ G L+ +G K + G N + PV + K V S
Sbjct: 278 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW 337
Query: 401 NTSIVIAADDSLIAWGVSPTYGELGMGE-INKSTAKPKEVSRMD 443
++ + +++ AWG T G+LG+GE ++++ K E +D
Sbjct: 338 RHTLAVTERNNVFAWG-RGTNGQLGIGESVDRNFPKIIEALSVD 380
Score = 99.1 bits (236), Expect = 6e-21
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 30/241 (12%)
Query: 107 FTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNI 166
F R +++ +G A H+ V+E+G+ Y +G G LG GD R VPE V G+ +
Sbjct: 169 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 226
Query: 167 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAE 226
A G HT+ V+ +G +Y G +K GQ G G+ ++ + + I ++ G
Sbjct: 227 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR 286
Query: 227 FSMILDCNGNLHSFGMPEYGQL--GHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
+M L +G L+ +G ++GQ+ G+N D + P Q+
Sbjct: 287 HTMALTSDGKLYGWGWNKFGQVGVGNNLD--------------QCSPVQVRF-------- 324
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
D +V +SCG HT+A+ F+WG G G+LG E D N P++I+
Sbjct: 325 ----PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 380
Query: 345 G 345
G
Sbjct: 381 G 381
Score = 78.6 bits (185), Expect = 8e-15
Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 38/306 (12%)
Query: 164 KNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVG 222
+ ++ + G H++ + V + G + GQ G G+ + PT++ +G IV V
Sbjct: 15 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP-SPTQLSALDGHQIVSVT 73
Query: 223 CGAEFSMILDCNG-NLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKS 281
CGA+ ++ +G ++S+G ++G+LGH S+ L F +P
Sbjct: 74 CGADHTVAYSQSGMEVYSWGWGDFGRLGHG-------NSSDL---FTPLP---------- 113
Query: 282 KDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYF 341
I + + I ++CG++H +A+ SWG G+LG + +D VP+ I+ F
Sbjct: 114 ----IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 169
Query: 342 DTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK----RTGEA--NMYPKPVHDLTGWNIK 395
+ G ++ V G ++ AV + G L+ +G + G+ + P+ V G +
Sbjct: 170 E--GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 227
Query: 396 SVGTS-NTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGY 454
V +I ++ +L +G S YG+LG G++ P ++ + + I+Q++ G+
Sbjct: 228 MVACGWRHTISVSYSGALYTYGWS-KYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGW 285
Query: 455 SHTLLL 460
HT+ L
Sbjct: 286 RHTMAL 291
Score = 72.9 bits (171), Expect = 4e-13
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 283 DGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFD 342
D P + V I+ S G +H+VA+ S SWG G G+LGH + +D P + D
Sbjct: 8 DEVTAPPRKVLII--SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD 65
Query: 343 TVGRGVRSVHCGGTYSLAVNDQGA---LFMFGQTKRTGEAN----MYPKPVHDLTGWNIK 395
G + SV CG +++A + G + +G R G N P P+ L G IK
Sbjct: 66 --GHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 123
Query: 396 SVGTSNT-SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGY 454
+ ++ + + + + +WG + G+LG+G+ S P+++ + + I VA G
Sbjct: 124 QIACGDSHCLAVTMEGEVQSWGRNQN-GQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGA 181
Query: 455 SHTLLLCDN 463
HT + ++
Sbjct: 182 EHTAAVTED 190
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 106 KFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN 165
+F D + +++ C H++ V+E + +GR GQLG G++V R+ P+++ L
Sbjct: 323 RFPDDQ-KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS--- 378
Query: 166 IIHAAVGRH 174
+ A G+H
Sbjct: 379 -VDGASGQH 386
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 111 bits (267), Expect = 1e-24
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 43/311 (13%)
Query: 122 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 181
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 153 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 212
Query: 182 TGCVYACGDNKSGQCGLGN------TTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG 235
G VYACG G+ G TTPQ++ T +K +V+ G F+ +L G
Sbjct: 213 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV--TSLK--NIFVVQAAIGNYFTAVLSREG 268
Query: 236 NLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIV 295
+++F G+LGH T+ + P+ + + P+++V +V
Sbjct: 269 KVYTFSWGNDGRLGHQTEAA------------DVEPRPL-----------LGPLENVPVV 305
Query: 296 DLSCGNNHTVAIDSMKR---AFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVH 352
++ G + +A+ +S G G G+LGH + DE PR+I+ F + R V
Sbjct: 306 QIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVA 365
Query: 353 CGGTYSLAVNDQGALFMFGQTK------RTGEANMYPKPVHDLTGWNIKSVGTSN-TSIV 405
G ++ V G + +G + E PK V L+ V T + T+ V
Sbjct: 366 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFV 425
Query: 406 IAADDSLIAWG 416
++ D + ++G
Sbjct: 426 VSDDGDVYSFG 436
Score = 81.8 bits (193), Expect = 9e-16
Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 38/269 (14%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 170
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 196 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 255
Query: 171 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGCGAEFSM 229
+G + T ++ G VY G+ G + +P P+V++ G + +
Sbjct: 256 IGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLL 315
Query: 230 ILDC--NG-NLHSFGMPEYGQLGH--NTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
L C NG +++S G G+LGH TD KY ++ F+ + Q +
Sbjct: 316 ALACQPNGMSVYSVGCGLGGKLGHGSRTDEKY----PRVIEQFQILNLQPRV-------- 363
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
++ G H + R +WG+G +G LGH ++ E+VP++++
Sbjct: 364 ------------VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLS-- 409
Query: 345 GRGVRSVHCG-GTY-SLAVNDQGALFMFG 371
V++VH G Y + V+D G ++ FG
Sbjct: 410 --HVKAVHVATGDYTTFVVSDDGDVYSFG 436
Score = 70.1 bits (164), Expect = 3e-12
Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 47/312 (15%)
Query: 169 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGCGAEF 227
A G H++ VT G VY G N SGQ G G+T + ++P R G I++ GA
Sbjct: 148 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR-SLQGVRIIQAAAGAAR 206
Query: 228 SMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYIT 287
+M++ +G +++ G +G+ + G VT+ +L +T
Sbjct: 207 TMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQL----------------------VT 244
Query: 288 PVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPR-LIKYFDTVGR 346
+K++ +V + GN T + + +++ +G GRLGH + + PR L+ + V
Sbjct: 245 SLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENV-- 302
Query: 347 GVRSVHCGGTYSLAVNDQ-----------GALFMFGQTKRTGEANMYPKPVHDLTGWNIK 395
V + G Y LA+ Q G G RT E YP+ + N++
Sbjct: 303 PVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDE--KYPRVIEQFQILNLQ 360
Query: 396 ----SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVA 451
+ G + + V+ D + WG YG LG G + + PK V + + VA
Sbjct: 361 PRVVAAGAWHAA-VVGQDGRVCTWGWG-RYGCLGHGN-EECESVPKVVEGLSHVKAVHVA 417
Query: 452 MGYSHTLLLCDN 463
G T ++ D+
Sbjct: 418 TGDYTTFVVSDD 429
Score = 60.5 bits (140), Expect = 2e-09
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 94 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 153
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 343 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 400
Query: 154 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 206
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 401 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 460
Query: 207 KP---TRIKYNGTPIVKVGCGAEF-----SMILDCNGNLHSFGMPEYGQLG 249
P T +K +V++ + L +G L +FG + GQLG
Sbjct: 461 SPTVVTSLKQVNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQLG 511
Score = 48.4 bits (110), Expect = 1e-05
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 14/210 (6%)
Query: 134 YTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIH--AAVGRHHTLFVTDTGCVYACGDN 191
Y+ G G+LG G P ++ + + N+ A G H V G V G
Sbjct: 327 YSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWG 386
Query: 192 KSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHN 251
+ G G GN + + + V V G + ++ +G+++SFG E LGH+
Sbjct: 387 RYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHH 446
Query: 252 TDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMK 311
+ + H + + +++ + + +++ + N HT A+
Sbjct: 447 PS-----FDEQGNRHANVLSPTVVTSLKQVNERMV----QISLTNSIYWNAHTFALTESG 497
Query: 312 RAFSWGFGGFGRLG---HAEQKDENVPRLI 338
+ F++G G G+LG QK+ VP +
Sbjct: 498 KLFAFGAGDQGQLGTELGKNQKERCVPEKV 527
Score = 41.5 bits (93), Expect = 0.001
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 300 GNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSL 359
G H+VA+ S +++G+ G+LGH +DE R+ G + G ++
Sbjct: 151 GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDE--ARIQPVRSLQGVRIIQAAAGAARTM 208
Query: 360 AVNDQGALF-----MFGQTKRTGEAN---MYPKPVHDLTGWNIKSVGTSNTSIVIAADDS 411
++D G ++ FG+ + G+ P+ V L + N + + +
Sbjct: 209 LISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREG 268
Query: 412 LI---AWGVSPTYGELGMGEINKSTAKPKE-VSRMDSLGITQVAMGYSHTL-LLCDNN 464
+ +WG G LG + + +P+ + ++++ + Q+A GY + L L C N
Sbjct: 269 KVYTFSWG---NDGRLG-HQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLALACQPN 322
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 111 bits (267), Expect = 1e-24
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 43/311 (13%)
Query: 122 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 181
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 53 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 112
Query: 182 TGCVYACGDNKSGQCGLGN------TTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG 235
G VYACG G+ G TTPQ++ T +K +V+ G F+ +L G
Sbjct: 113 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV--TSLK--NIFVVQAAIGNYFTAVLSREG 168
Query: 236 NLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIV 295
+++F G+LGH T+ + P+ + + P+++V +V
Sbjct: 169 KVYTFSWGNDGRLGHQTEAA------------DVEPRPL-----------LGPLENVPVV 205
Query: 296 DLSCGNNHTVAIDSMKR---AFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVH 352
++ G + +A+ +S G G G+LGH + DE PR+I+ F + R V
Sbjct: 206 QIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVA 265
Query: 353 CGGTYSLAVNDQGALFMFGQTK------RTGEANMYPKPVHDLTGWNIKSVGTSN-TSIV 405
G ++ V G + +G + E PK V L+ V T + T+ V
Sbjct: 266 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFV 325
Query: 406 IAADDSLIAWG 416
++ D + ++G
Sbjct: 326 VSDDGDVYSFG 336
Score = 81.8 bits (193), Expect = 9e-16
Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 38/269 (14%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 170
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 96 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 155
Query: 171 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGCGAEFSM 229
+G + T ++ G VY G+ G + +P P+V++ G + +
Sbjct: 156 IGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLL 215
Query: 230 ILDC--NG-NLHSFGMPEYGQLGH--NTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
L C NG +++S G G+LGH TD KY ++ F+ + Q +
Sbjct: 216 ALACQPNGMSVYSVGCGLGGKLGHGSRTDEKY----PRVIEQFQILNLQPRV-------- 263
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
++ G H + R +WG+G +G LGH ++ E+VP++++
Sbjct: 264 ------------VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLS-- 309
Query: 345 GRGVRSVHCG-GTY-SLAVNDQGALFMFG 371
V++VH G Y + V+D G ++ FG
Sbjct: 310 --HVKAVHVATGDYTTFVVSDDGDVYSFG 336
Score = 70.1 bits (164), Expect = 3e-12
Identities = 78/312 (25%), Positives = 132/312 (42%), Gaps = 47/312 (15%)
Query: 169 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGCGAEF 227
A G H++ VT G VY G N SGQ G G+T + ++P R G I++ GA
Sbjct: 48 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR-SLQGVRIIQAAAGAAR 106
Query: 228 SMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYIT 287
+M++ +G +++ G +G+ + G VT+ +L +T
Sbjct: 107 TMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQL----------------------VT 144
Query: 288 PVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPR-LIKYFDTVGR 346
+K++ +V + GN T + + +++ +G GRLGH + + PR L+ + V
Sbjct: 145 SLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENV-- 202
Query: 347 GVRSVHCGGTYSLAVNDQ-----------GALFMFGQTKRTGEANMYPKPVHDLTGWNIK 395
V + G Y LA+ Q G G RT E YP+ + N++
Sbjct: 203 PVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDE--KYPRVIEQFQILNLQ 260
Query: 396 ----SVGTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVA 451
+ G + + V+ D + WG YG LG G + + PK V + + VA
Sbjct: 261 PRVVAAGAWHAA-VVGQDGRVCTWGWG-RYGCLGHGN-EECESVPKVVEGLSHVKAVHVA 317
Query: 452 MGYSHTLLLCDN 463
G T ++ D+
Sbjct: 318 TGDYTTFVVSDD 329
Score = 60.5 bits (140), Expect = 2e-09
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 94 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 153
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 243 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300
Query: 154 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 206
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 301 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 360
Query: 207 KP---TRIKYNGTPIVKVGCGAEF-----SMILDCNGNLHSFGMPEYGQLG 249
P T +K +V++ + L +G L +FG + GQLG
Sbjct: 361 SPTVVTSLKQVNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQLG 411
Score = 48.4 bits (110), Expect = 1e-05
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 14/210 (6%)
Query: 134 YTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIH--AAVGRHHTLFVTDTGCVYACGDN 191
Y+ G G+LG G P ++ + + N+ A G H V G V G
Sbjct: 227 YSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWG 286
Query: 192 KSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHN 251
+ G G GN + + + V V G + ++ +G+++SFG E LGH+
Sbjct: 287 RYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHH 346
Query: 252 TDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMK 311
+ + H + + +++ + + +++ + N HT A+
Sbjct: 347 PS-----FDEQGNRHANVLSPTVVTSLKQVNERMV----QISLTNSIYWNAHTFALTESG 397
Query: 312 RAFSWGFGGFGRLG---HAEQKDENVPRLI 338
+ F++G G G+LG QK+ VP +
Sbjct: 398 KLFAFGAGDQGQLGTELGKNQKERCVPEKV 427
Score = 41.5 bits (93), Expect = 0.001
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 300 GNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSL 359
G H+VA+ S +++G+ G+LGH +DE R+ G + G ++
Sbjct: 51 GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDE--ARIQPVRSLQGVRIIQAAAGAARTM 108
Query: 360 AVNDQGALF-----MFGQTKRTGEAN---MYPKPVHDLTGWNIKSVGTSNTSIVIAADDS 411
++D G ++ FG+ + G+ P+ V L + N + + +
Sbjct: 109 LISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREG 168
Query: 412 LI---AWGVSPTYGELGMGEINKSTAKPKE-VSRMDSLGITQVAMGYSHTL-LLCDNN 464
+ +WG G LG + + +P+ + ++++ + Q+A GY + L L C N
Sbjct: 169 KVYTFSWG---NDGRLG-HQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLALACQPN 222
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 111 bits (267), Expect = 1e-24
Identities = 87/333 (26%), Positives = 149/333 (44%), Gaps = 46/333 (13%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H + ++ G+ +T+GR + GQLG GD + ++P+LV I AA G H+ F
Sbjct: 55 CGGAHVIALTSGGKVFTWGRGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWSHSGF 114
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNL 237
V+D+GC++ CG+ GQ G G+T + P ++ +N + V CG S++L +
Sbjct: 115 VSDSGCIFTCGNGSFGQLGHGDTL-SLSTPAKVSHFNNDSVKMVACGMRHSLVLFAGNQV 173
Query: 238 HSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDL 297
FG + GQLG ++D + S L ++ +KDV +V +
Sbjct: 174 CGFGSGKRGQLGFSSDR---IKSVNLPC-------------------VVSGLKDVEVVRI 211
Query: 298 SCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTY 357
S +H+ AI + + FSWG G G G +++P + + R V G +
Sbjct: 212 SANGDHSAAISADGQFFSWGRGFCG--GPDVHAPQSLPSPLSF--------REVAVGWNH 261
Query: 358 SLAVNDQGALFMFGQT---------KRTGEANMYPKPVHDLTGWNIKSVGT-SNTSIVIA 407
+L + G +F G T + + + V D G + + + S +
Sbjct: 262 ALLLTVDGEVFKLGSTLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAVT 321
Query: 408 ADDSLIAWGVSPTYGELGMGEINKSTAKPKEVS 440
+ + WG +G+LG+G N T+ P+ VS
Sbjct: 322 ENGEVKTWGWG-EHGQLGLGNTNDQTS-PELVS 352
Score = 69.3 bits (162), Expect = 5e-12
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 32/344 (9%)
Query: 129 EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYAC 188
EE + +++G GQLG +P+L+ +I A G H + +T G V+
Sbjct: 13 EEEQVWSWGAGTDGQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGKVFTW 72
Query: 189 GDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQL 248
G SGQ G G+ L ++ + I + G S + +G + + G +GQL
Sbjct: 73 GRGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWSHSGFVSDSGCIFTCGNGSFGQL 132
Query: 249 GHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAID 308
GH D T K+S HF VK V +CG H++ +
Sbjct: 133 GHG-DTLSLSTPAKVS-HFNN-----------------DSVKMV-----ACGMRHSLVLF 168
Query: 309 SMKRAFSWGFGGFGRLGHAEQ--KDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGA 366
+ + +G G G+LG + K N+P ++ V V + G +S A++ G
Sbjct: 169 AGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDV--EVVRISANGDHSAAISADGQ 226
Query: 367 LFMFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIAWGVS-PTYGELG 425
F +G+ G P+ + + +VG N ++++ D + G + E
Sbjct: 227 FFSWGRGFCGGPDVHAPQSLPSPLSFREVAVGW-NHALLLTVDGEVFKLGSTLNKQPEKQ 285
Query: 426 MGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNNIEEVK 469
+I+ S A ++V D + + Q+A G H+ + +N EVK
Sbjct: 286 QLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENG--EVK 327
Score = 66.9 bits (156), Expect = 3e-11
Identities = 66/280 (23%), Positives = 113/280 (40%), Gaps = 38/280 (13%)
Query: 115 IVSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
+++ AG HS VS+ G +T G + GQLG GDT++ S P V ++ A G
Sbjct: 101 VITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLGHGDTLSLSTPAKVSHFNNDSVKMVACG 160
Query: 173 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILK-PTRIK-YNGTPIVKVGCGAEFSMI 230
H+L + V G K GQ G + + + P + +V++ + S
Sbjct: 161 MRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAA 220
Query: 231 LDCNGNLHSFGMPEYG-------------------QLGHN------TDGKYFVTSTKLSF 265
+ +G S+G G +G N DG+ F KL
Sbjct: 221 ISADGQFFSWGRGFCGGPDVHAPQSLPSPLSFREVAVGWNHALLLTVDGEVF----KLGS 276
Query: 266 HFETIPKQITLYIQKSKDGY--ITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGR 323
P++ L I S+ + + V ++ ++ G H+ A+ +WG+G G+
Sbjct: 277 TLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENGEVKTWGWGEHGQ 336
Query: 324 LGHAEQKDENVPRLIKY--FDTVGRGVRSVHCGGTYSLAV 361
LG D+ P L+ D + ++ V+CG ++ AV
Sbjct: 337 LGLGNTNDQTSPELVSLGSIDLRTKEIK-VYCGSGFTYAV 375
Score = 53.2 bits (122), Expect = 4e-07
Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 48/303 (15%)
Query: 185 VYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKV-GCGAEFSMILDCNGNLHSFGMP 243
V++ G GQ G ++L P + P + + CG + L G + ++G
Sbjct: 17 VWSWGAGTDGQLGTTKLQDELL-PQLLSLTSLPSISMLACGGAHVIALTSGGKVFTWGRG 75
Query: 244 EYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNH 303
GQLGH L+ T+PK ++ + D I + G +H
Sbjct: 76 SSGQLGHGDI---------LNI---TLPKLVSFF------------DDSVITQAAAGWSH 111
Query: 304 TVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVND 363
+ + F+ G G FG+LGH + + P + +F+ V+ V CG +SL +
Sbjct: 112 SGFVSDSGCIFTCGNGSFGQLGHGDTLSLSTPAKVSHFN--NDSVKMVACGMRHSLVLFA 169
Query: 364 QGALFMFGQTKR--TGEANMYPKPVH---DLTGWN----IKSVGTSNTSIVIAADDSLIA 414
+ FG KR G ++ K V+ ++G ++ + S I+AD +
Sbjct: 170 GNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAISADGQFFS 229
Query: 415 WGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL-CDNNIEEVKQKLD 473
WG G G +++ + P +S +VA+G++H LLL D + ++ L+
Sbjct: 230 WG----RGFCGGPDVHAPQSLPSPLS------FREVAVGWNHALLLTVDGEVFKLGSTLN 279
Query: 474 TIP 476
P
Sbjct: 280 KQP 282
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 104 bits (249), Expect = 1e-22
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 42/257 (16%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+ +V+ G+ +TFG G LG GD + +P V LKG + AA G HT
Sbjct: 407 CGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAA 466
Query: 179 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTP-IVKVGCGA 225
V + +G ++ GD G+ G GN P+++ PT + P +V CG
Sbjct: 467 VVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLV-PTCVAALVEPNFCQVACGH 525
Query: 226 EFSMILDCNGNLHSFGMPEYGQLGH-NTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
++ L +G++++ G P YGQLG+ + DGK P ++ + KS
Sbjct: 526 SLTVALTTSGHVYTMGSPVYGQLGNSHADGK--------------TPNRVEGKLHKS--- 568
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
+ +++CG H + S ++WG G GRLGH + D N P L++
Sbjct: 569 --------FVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVE--SLK 618
Query: 345 GRGVRSVHCGGTYSLAV 361
+ V+S+ CG ++ AV
Sbjct: 619 DKQVKSIACGTNFTAAV 635
Score = 97.5 bits (232), Expect = 2e-20
Identities = 87/354 (24%), Positives = 155/354 (43%), Gaps = 30/354 (8%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G H+
Sbjct: 302 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCA 361
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY--NGTPIVKVGCGAEFSMILDCNGN 236
VT +G +Y G G G GN + P R+ + G + + CG + ++ G
Sbjct: 362 VTLSGDLYTWGKGDFGVLGHGNEVSHWV-PKRVNFLLEGIHVSSIACGPYHTAVVTSAGQ 420
Query: 237 LHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQI-TLYIQKSKDGYITPVKDVTIV 295
L +FG +G LGH F IP+++ +L ++ +V
Sbjct: 421 LFTFGDGTFGVLGHGDKKSVF------------IPREVDSLKGLRTVRAACGVWHTAAVV 468
Query: 296 DLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGG 355
++ G++ + S K F+WG G GRLGH ++ + VP + V V CG
Sbjct: 469 EVMVGSSSSSNCSSGK-LFTWGDGDKGRLGHGNKEPKLVPTCVAAL--VEPNFCQVACGH 525
Query: 356 TYSLAVNDQGALFMFGQT--KRTGEANMYPKPVHDLTGWNIKS------VGTSNTSIVIA 407
+ ++A+ G ++ G + G ++ K + + G KS G + + V+
Sbjct: 526 SLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGAYHVA-VLT 584
Query: 408 ADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ + WG + G LG G+++ + P V + + +A G + T +C
Sbjct: 585 SRTEVYTWG-KGSNGRLGHGDVDDRNS-PTLVESLKDKQVKSIACGTNFTAAVC 636
Score = 70.9 bits (166), Expect = 2e-12
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
+ +++CG H V + +FSWG GRLGH + P+LI +T + V C
Sbjct: 297 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTT--NIELVAC 354
Query: 354 GGTYSLAVNDQGALFMFGQTK--RTGEAN----MYPKPVHD-LTGWNIKSV--GTSNTSI 404
G +S AV G L+ +G+ G N PK V+ L G ++ S+ G +T++
Sbjct: 355 GEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAV 414
Query: 405 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 457
V +A L +G T+G LG G+ KS P+EV + L + A G HT
Sbjct: 415 VTSA-GQLFTFG-DGTFGVLGHGD-KKSVFIPREVDSLKGLRTVRAACGVWHT 464
Score = 57.6 bits (133), Expect = 2e-08
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 42/260 (16%)
Query: 218 IVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLY 277
+ + CG + ++++ G S+G G+LGH D
Sbjct: 297 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSN---------------------- 334
Query: 278 IQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRL 337
IQ+ K I + I ++CG H+ A+ ++WG G FG LGH + VP+
Sbjct: 335 IQQPK--LIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKR 392
Query: 338 IKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQ----TKRTGEAN--MYPKPVHDLTG 391
+ + G V S+ CG ++ V G LF FG G+ P+ V L G
Sbjct: 393 VNFL-LEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKG 451
Query: 392 WNI--KSVGTSNTSIVI-----AADDSLIAWGVSPTYGELGMGEINKSTAKPKE----VS 440
+ G +T+ V+ ++ S + G T+G+ G + +PK V+
Sbjct: 452 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVA 511
Query: 441 RMDSLGITQVAMGYSHTLLL 460
+ QVA G+S T+ L
Sbjct: 512 ALVEPNFCQVACGHSLTVAL 531
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 102 bits (244), Expect = 6e-22
Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 43/355 (12%)
Query: 128 SEEGEAYT--FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCV 185
SE G+ + +G G+LG G+ ++ P + L +I A G HTLF+T+T V
Sbjct: 44 SESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLTETRRV 103
Query: 186 YACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEY 245
+A G N GQ G+ + + P + I+ + G S + +G L+ +G
Sbjct: 104 FATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAAITVDGELYMWGKNSS 163
Query: 246 GQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTV 305
GQLG K + +P ++ + +TI ++ G+ H+V
Sbjct: 164 GQLGLG----------KKAARVVRVPTKVEA------------LHGITIQSVALGSEHSV 201
Query: 306 AIDSMKRAFSWGFGGFGRLGHAEQKD---------ENVPRLIKYFDTVGRGVRSVHCGGT 356
A+ SWG GG GRLGH Q E PRLIK + G V +V G
Sbjct: 202 AVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELE--GIKVTNVAAGLL 259
Query: 357 YSLAVNDQGALFMFGQTKRT-----GEANMY-PKPVHDLTGWNIKSVGTSNTSIVIAADD 410
+S ++ G+ FMFG+ G N P + ++ + G +T +V +
Sbjct: 260 HSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGGE 319
Query: 411 SLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDNNI 465
L WG S G LG S + + ++QV+ G+ HT + DNN+
Sbjct: 320 -LYTWG-SNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNNV 372
Score = 97.1 bits (231), Expect = 2e-20
Identities = 82/364 (22%), Positives = 153/364 (42%), Gaps = 38/364 (10%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H++ ++E + G N CGQLG D + ++ L K+I+H + G +H+
Sbjct: 89 CGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAA 148
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILK-PTRIK-YNGTPIVKVGCGAEFSMILDCNGN 236
+T G +Y G N SGQ GLG ++++ PT+++ +G I V G+E S+ + G
Sbjct: 149 ITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGGE 208
Query: 237 LHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVD 296
+ S+G G+LGH F L + E P+ I K +G + + +
Sbjct: 209 VLSWGGGGSGRLGHGHQSSLFGI---LRSNSEFTPRLI-----KELEG-------IKVTN 253
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
++ G H+ D AF +G ++G ++ P +I V CGG
Sbjct: 254 VAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPY----AEEVACGGY 309
Query: 357 YSLAVNDQGALFMFGQTKR----TGEANMYPKPVH---DLTGWNIKSVGTSNTSIVIAAD 409
++ V G L+ +G + T + PV + V +D
Sbjct: 310 HTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISD 369
Query: 410 DSLIAWGVSPTYGELGM------GEINKST----AKPKEVSRMDSLGITQVAMGYSHTLL 459
+++ WG ++G + G++ + A+P V ++ ++ G++HT
Sbjct: 370 NNVFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAA 429
Query: 460 LCDN 463
+ ++
Sbjct: 430 VLEH 433
Score = 47.6 bits (108), Expect = 2e-05
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 12/183 (6%)
Query: 289 VKDVTIVDLSCGNNHTVAIDSMKR-AFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRG 347
+KD + + + V+ +S KR A WG G +GRLG + P +
Sbjct: 26 LKDSKLGPIGVCCSRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALS--DHS 83
Query: 348 VRSVHCGGTYSLAVNDQGALFMFG--QTKRTGEAN-----MYPKPVHDLTGWNIKSVGTS 400
+ +V CGG ++L + + +F G + G ++ M P V L +
Sbjct: 84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGY 143
Query: 401 NTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAK-PKEVSRMDSLGITQVAMGYSHTLL 459
S I D L WG + + G+LG+G+ + P +V + + I VA+G H++
Sbjct: 144 YHSAAITVDGELYMWGKNSS-GQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVA 202
Query: 460 LCD 462
+ D
Sbjct: 203 VTD 205
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 101 bits (242), Expect = 1e-21
Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 42/356 (11%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C ++VLV+++G+ Y++G + G+LG G P+L+ E G + A G HT
Sbjct: 303 CGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYVPHPKLIDEFNGSTVELADCGEFHTCA 362
Query: 179 VTDTGCVYAC--GDNKSGQCGLGNTTPQILKPTRI--KYNGTPIVKVGCGAEFSMILDCN 234
VT +G +YA GD+ +G GLG+ KP RI + G + + CG + +
Sbjct: 363 VTASGDLYAWGDGDHNAGLLGLGSGASH-WKPVRILGQMEGIYVKAISCGPWHTAFVTSE 421
Query: 235 GNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTI 294
G L +FG +G LGH G T+ IP+++ ++ +G T
Sbjct: 422 GKLFTFGDGTFGALGH---GDRISTN---------IPREV-----EALNGCRT------- 457
Query: 295 VDLSCGNNHTVAI-------DSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRG 347
+ +CG H+ A+ S + F+WG G GRLGH + + +P + DT
Sbjct: 458 IKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTT--S 515
Query: 348 VRSVHCGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHDLTGWN-IKSVGTSNTSI-V 405
+ V CG + ++A++ G ++ G + + P + G + ++ V I V
Sbjct: 516 FQQVACGQSITVALSMSGQVYAMGTADPSHDIVRAPSCIEGGLGKSFVQEVACGFHHIAV 575
Query: 406 IAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ + + WG + G+LG G+ + P V + + +V G ++T +C
Sbjct: 576 LNSKAEVYTWG-KGSNGQLGHGD-TEYRCMPTLVKALKGKQVRKVVCGSNYTATIC 629
Score = 77.8 bits (183), Expect = 1e-14
Identities = 69/279 (24%), Positives = 118/279 (42%), Gaps = 35/279 (12%)
Query: 116 VSGCTAGHSVLVSEEGEAYTFGR--NACGQLGFGDTVTRSVP-ELVPELKGKNIIHAAVG 172
++ C H+ V+ G+ Y +G + G LG G + P ++ +++G + + G
Sbjct: 352 LADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCG 411
Query: 173 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMIL- 231
HT FVT G ++ GD G G G+ + NG +K CG S +
Sbjct: 412 PWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNIPREVEALNGCRTIKAACGVWHSAAVV 471
Query: 232 ------DCNGNLHSFGMPEYGQLGHNTDGKYFVTS--TKL---SFHFETIPKQITLYIQK 280
+G L ++G + G+LGH + S T+L SF + IT+ +
Sbjct: 472 SVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTSFQQVACGQSITVALSM 531
Query: 281 SKD----GYITPVKDVT--------------IVDLSCGNNHTVAIDSMKRAFSWGFGGFG 322
S G P D+ + +++CG +H ++S ++WG G G
Sbjct: 532 SGQVYAMGTADPSHDIVRAPSCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTWGKGSNG 591
Query: 323 RLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAV 361
+LGH + + +P L+K G+ VR V CG Y+ +
Sbjct: 592 QLGHGDTEYRCMPTLVKALK--GKQVRKVVCGSNYTATI 628
Score = 60.5 bits (140), Expect = 2e-09
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
+SCG N+ V + + +SWG GRLGH P+LI F+ G V CG
Sbjct: 301 ISCGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYVPHPKLIDEFN--GSTVELADCGEF 358
Query: 357 YSLAVNDQGALFMFGQTKRT------GEANMYPKPVH---DLTGWNIKSV--GTSNTSIV 405
++ AV G L+ +G G + KPV + G +K++ G +T+ V
Sbjct: 359 HTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFV 418
Query: 406 IAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 457
++ L +G T+G LG G+ ST P+EV ++ + A G H+
Sbjct: 419 -TSEGKLFTFG-DGTFGALGHGD-RISTNIPREVEALNGCRTIKAACGVWHS 467
Score = 49.6 bits (113), Expect = 4e-06
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 113 RLIVSGCTAGHSVLV-------SEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN 165
R I + C HS V + G+ +T+G G+LG GD R +P V EL +
Sbjct: 456 RTIKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTS 515
Query: 166 IIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGA 225
A G+ T+ ++ +G VYA G + P ++ K + + +V CG
Sbjct: 516 FQQVACGQSITVALSMSGQVYAMGTADPSHDIV--RAPSCIEGGLGK---SFVQEVACGF 570
Query: 226 EFSMILDCNGNLHSFGMPEYGQLGHNTDGKY 256
+L+ ++++G GQLGH D +Y
Sbjct: 571 HHIAVLNSKAEVYTWGKGSNGQLGHG-DTEY 600
Score = 48.8 bits (111), Expect = 8e-06
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 45/257 (17%)
Query: 221 VGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQK 280
+ CG +++++ G ++S+G G+LGH +V KL F
Sbjct: 301 ISCGTNYAVLVTKQGQMYSWGEESGGRLGHGVCS--YVPHPKLIDEF------------- 345
Query: 281 SKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFG--GFGRLGHAEQKDENVP-RL 337
+G + D CG HT A+ + ++WG G G LG P R+
Sbjct: 346 --NGSTVELAD-------CGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRI 396
Query: 338 IKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQ----TKRTGE--ANMYPKPVHDLTG 391
+ + G V+++ CG ++ V +G LF FG G+ + P+ V L G
Sbjct: 397 LGQME--GIYVKAISCGPWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNIPREVEALNG 454
Query: 392 W-NIKSV-GTSNTSIVIA------ADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMD 443
IK+ G +++ V++ + L WG G LG G+I + P V+ +D
Sbjct: 455 CRTIKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDD-GRLGHGDI-ECRLIPSCVTELD 512
Query: 444 SLGITQVAMGYSHTLLL 460
+ QVA G S T+ L
Sbjct: 513 TTSFQQVACGQSITVAL 529
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 99.5 bits (237), Expect = 4e-21
Identities = 88/355 (24%), Positives = 148/355 (41%), Gaps = 32/355 (9%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H LV+ +GE +T+G G+LG G V S P+LV L NI A G +HT
Sbjct: 258 CGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDISRPKLVEFLALTNIDFVACGEYHTCV 317
Query: 179 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCGAEFSMILDCN 234
V+ +G +++ GD + G G G+ + P R+ G ++ V CG S + N
Sbjct: 318 VSTSGDLFSWGDGIHNVGLLGHGSDISHWI-PKRVSGPLEGLQVLSVACGTWHSALATAN 376
Query: 235 GNLHSFGMPEYGQLGH-NTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVT 293
G L +FG +G LGH N + + + +T+ +++
Sbjct: 377 GKLFTFGDGAFGVLGHGNRESVSYPKEVQSLNGLKTVKVACSIW------------HTAA 424
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
IV++ T S ++ F+WG G RLGH ++ +P + + + C
Sbjct: 425 IVEVM---GQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVS--SLIDYNFHKIAC 479
Query: 354 GGTYSLAVNDQGALFMFGQTKRTGEAN-----MYPKPVHD-LTGWNIKSVGTSNTSI-VI 406
G T+++A+ G +F G T N P V D L G ++ + + V+
Sbjct: 480 GHTFTVALTTSGHVFTMGGTAHGQLGNSISDGKLPCLVQDRLVGEFVEEIACGAHHVAVL 539
Query: 407 AADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ + WG G LG G+ + P V + + ++ G + T +C
Sbjct: 540 TSRSEVFTWGKGAN-GRLGHGD-TEDKRTPTLVEALRDRHVKSLSCGSNFTSSIC 592
Score = 58.4 bits (135), Expect = 1e-08
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 288 PVKDVTIVDLS---CGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
P++ ++D+ CG H + F+WG GRLGH Q D + P+L+++
Sbjct: 244 PLESNVVLDVHQIVCGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDISRPKLVEFLALT 303
Query: 345 GRGVRSVHCGGTYSLAVNDQGALFMFGQ--------TKRTGEANMYPKPVH-DLTGWNIK 395
+ V CG ++ V+ G LF +G + ++ PK V L G +
Sbjct: 304 --NIDFVACGEYHTCVVSTSGDLFSWGDGIHNVGLLGHGSDISHWIPKRVSGPLEGLQVL 361
Query: 396 SVGTSN-TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGY 454
SV S + A+ L +G +G LG G +S + PKEV ++ L +VA
Sbjct: 362 SVACGTWHSALATANGKLFTFG-DGAFGVLGHGN-RESVSYPKEVQSLNGLKTVKVACSI 419
Query: 455 SHTLLLCD 462
HT + +
Sbjct: 420 WHTAAIVE 427
Score = 45.6 bits (103), Expect = 7e-05
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 67 TFYKTPGVLMIAGLVSWDLTARR-----DNNPTKRTHPNLYTF------HKFTDRRYRLI 115
+ + T ++ + G + +++R+ D + + H N T+ D + I
Sbjct: 418 SIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFHKI 477
Query: 116 VSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRH 174
G T +V ++ G +T G A GQLG +P LV + L G+ + A G H
Sbjct: 478 ACGHT--FTVALTTSGHVFTMGGTAHGQLG-NSISDGKLPCLVQDRLVGEFVEEIACGAH 534
Query: 175 HTLFVTDTGCVYACGDNKSGQCGLGNT----TPQILKPTRIKYNGTPIVKVGCGAEFS 228
H +T V+ G +G+ G G+T TP +++ R ++ + + CG+ F+
Sbjct: 535 HVAVLTSRSEVFTWGKGANGRLGHGDTEDKRTPTLVEALRDRH----VKSLSCGSNFT 588
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 98.7 bits (235), Expect = 7e-21
Identities = 89/354 (25%), Positives = 147/354 (41%), Gaps = 29/354 (8%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+ LVS +GE +T+G + G+LG G + P+L+ L +I A G HT
Sbjct: 279 CGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCA 338
Query: 179 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCGAEFSMILDCN 234
VT TG +Y GD + +G G G + P RI G I V CG + ++
Sbjct: 339 VTMTGEIYTWGDGTHNAGLLGHGTDVSHWI-PKRISGPLEGLQIASVSCGPWHTALITST 397
Query: 235 GNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTI 294
G L +FG +G LGH F E++ T+ + + + +V +
Sbjct: 398 GQLFTFGDGTFGVLGHGDKETVFYPR-----EVESLSGLRTIAVACGV-WHAAAIVEVIV 451
Query: 295 VDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCG 354
H+ + S + F+WG G RLGH +++ P + + V CG
Sbjct: 452 -------THSSSSVSSGKLFTWGDGDKSRLGHGDKEPRLKPTCVSAL--IDHTFHRVACG 502
Query: 355 GTYSLAVNDQGALFMFGQT--KRTGEAN---MYPKPVHD-LTGWNIKSVGTSNTSI-VIA 407
+ ++ + G ++ G T + G N P V D LT ++ + + V+
Sbjct: 503 HSLTVGLTTSGKVYTMGSTVYGQLGNPNADGKLPCLVEDKLTKDCVEEIACGAYHVAVLT 562
Query: 408 ADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ + + WG G LG G++ A P V + + +A G + T +C
Sbjct: 563 SRNEVFTWGKGAN-GRLGHGDVEDRKA-PTLVDALKERHVKNIACGSNFTAAIC 614
Score = 60.1 bits (139), Expect = 3e-09
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 288 PVKDVTIVD---LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
P++ ++D ++CG H + F+WG GRLGH KD P+LI+
Sbjct: 265 PLESNVVLDVHHIACGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIE--SLA 322
Query: 345 GRGVRSVHCGGTYSLAVNDQGALFMFGQTKR--------TGEANMYPKPVH-DLTGWNIK 395
+ V CG ++ AV G ++ +G T ++ PK + L G I
Sbjct: 323 ATSIDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIA 382
Query: 396 SV--GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMG 453
SV G +T++ I + L +G T+G LG G+ ++ P+EV + L VA G
Sbjct: 383 SVSCGPWHTAL-ITSTGQLFTFG-DGTFGVLGHGD-KETVFYPREVESLSGLRTIAVACG 439
Query: 454 YSHTLLLCD 462
H + +
Sbjct: 440 VWHAAAIVE 448
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 98.7 bits (235), Expect = 7e-21
Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 31/322 (9%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H LV+ +GE +T+ A G+LG G V P+LV L NI A G +HT
Sbjct: 1209 CGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCA 1268
Query: 179 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCGAEFSMILDCN 234
V+ +G ++ GD + G G G+ + P R+ G ++ V CG S + N
Sbjct: 1269 VSTSGDLFTWGDGIHNVGLLGHGSDLSHWI-PKRVSGPVEGLQVLSVACGTWHSALATAN 1327
Query: 235 GNLHSFGMPEYGQLGH-NTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVT 293
G L +FG +G LGH + + + K+ +T+ ++ V
Sbjct: 1328 GKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVW------------HTVA 1375
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
IV++ N T S ++ F+WG G RLGH ++ +P + + + C
Sbjct: 1376 IVEVM---NQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVS--SLIDYNFNQIAC 1430
Query: 354 GGTYSLAVNDQGALFMFGQTK--RTGEAN---MYPKPVHD-LTGWNIKSVGTSNTSI-VI 406
G T+++A+ G +F G T + G +N P V D L G ++ + + + V+
Sbjct: 1431 GHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVL 1490
Query: 407 AADDSLIAWGVSPTYGELGMGE 428
+ + WG + G LG G+
Sbjct: 1491 TSRSEVFTWG-KGSNGRLGHGD 1511
Score = 81.8 bits (193), Expect = 9e-16
Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 39/267 (14%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C HS L + G+ +TFG A G LG GD + S P+ V L G + A G HT+
Sbjct: 1316 CGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVA 1375
Query: 179 VTD----TGC------VYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFS 228
+ + TG ++ GD + G GN +L ++ CG F+
Sbjct: 1376 IVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHTFT 1435
Query: 229 MILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITP 288
+ L +G H F M G H G ++ +Q G
Sbjct: 1436 VALTTSG--HVFTM---GGTSHGQLGS------------SNSDGKLPCLVQDRLVGEF-- 1476
Query: 289 VKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGV 348
+ ++SCG++H + S F+WG G GRLGH ++ D P L++ R V
Sbjct: 1477 -----VEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRE--RHV 1529
Query: 349 RSVHCGGTYSLAVNDQGALFMFGQTKR 375
+S+ CG S+ G FG T++
Sbjct: 1530 KSISCGADQSVC---SGCRQAFGFTRK 1553
Score = 63.3 bits (147), Expect = 3e-10
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 289 VKDVTI-VDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRG 347
V T+ +D++CG H + F+W GRLGH Q D P+L+++
Sbjct: 1198 VNSTTVKIDIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALT--N 1255
Query: 348 VRSVHCGGTYSLAVNDQGALFMFGQ--------TKRTGEANMYPKPVH-DLTGWNIKSVG 398
+ V CG ++ AV+ G LF +G + ++ PK V + G + SV
Sbjct: 1256 IDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVA 1315
Query: 399 TSN-TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 457
S + A+ L +G +G LG G+ +S + PKEV + L +VA G HT
Sbjct: 1316 CGTWHSALATANGKLFTFG-DGAFGVLGHGD-RESVSYPKEVKMLSGLKTLKVACGVWHT 1373
Query: 458 LLLCD 462
+ + +
Sbjct: 1374 VAIVE 1378
Score = 46.0 bits (104), Expect = 6e-05
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 80 LVSW-DLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGR 138
L +W D R + K T+ D + I G T +V ++ G +T G
Sbjct: 1392 LFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHT--FTVALTTSGHVFTMGG 1449
Query: 139 NACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 197
+ GQLG ++ +P LV + L G+ + + G HH +T V+ G +G+ G
Sbjct: 1450 TSHGQLGSSNS-DGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLG 1508
Query: 198 LGN----TTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFG 241
G+ TP +++ R ++ + + CGA+ S+ C+G +FG
Sbjct: 1509 HGDKDDRKTPTLVEALRERH----VKSISCGADQSV---CSGCRQAFG 1549
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 97.5 bits (232), Expect = 2e-20
Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 32/290 (11%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 171
R +V G + +S+ + ++G+ +T+G N G LG +T T S P LV L I+ AA+
Sbjct: 41 RSVVGG--SRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAI 98
Query: 172 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY-------NGTPIVKVGCG 224
G H L V D G YA G N+ GQCG + + +P R + +V G
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAG 158
Query: 225 AEFSMILDCNGNLHSFGMP----EYGQLG--HNTDGKYFVTSTKL-SFHFETIPKQITLY 277
S++L G + ++G P + Q+ G V + +FH + + TL+
Sbjct: 159 GTHSVVLTREGYVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLW 218
Query: 278 IQKSKD------------GYITPVK---DVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFG 322
+ + Y PV+ D+T+VD++ G H+ A+ + + WG G G
Sbjct: 219 AWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHG 278
Query: 323 RLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQ 372
RLG + + K G + V CGGT+S+A+ G +F FG+
Sbjct: 279 RLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGR 328
Score = 87.8 bits (208), Expect = 1e-17
Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 12/201 (5%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
RLI G A H++ + E+G + +G N GQLG GDT RS P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAG 256
Query: 173 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRIK-YNGTPIVKVGCGAEFSMI 230
H+ +T+ G VY G + G+ G G N + P ++ G I++V CG S+
Sbjct: 257 GWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVA 316
Query: 231 LDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVK 290
L +G + SFG ++G+LG+ G+ T L P + +D K
Sbjct: 317 LTRDGRIFSFGRGDHGRLGY---GRKVTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAK 373
Query: 291 DVTIVDLSCGNNHTVAIDSMK 311
V +CG HT+AI K
Sbjct: 374 HV-----ACGGRHTLAIVEWK 389
Score = 79.0 bits (186), Expect = 6e-15
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
R + +G T HSV+++ EG +T+G+ GD SVP V L+ +I AVG
Sbjct: 153 RQVAAGGT--HSVVLTREGYVWTWGQ----PWPPGDIKQISVPVRVQGLENVRLI--AVG 204
Query: 173 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILD 232
H L + + G ++A G+N+ GQ G G+T P+ + +V + G S L
Sbjct: 205 AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALT 264
Query: 233 CNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDV 292
G ++ +G E+G+LG + K S+K+ +P+++ L +
Sbjct: 265 NEGEVYGWGRGEHGRLGFGDNDK----SSKM------LPQKVNLLAGED----------- 303
Query: 293 TIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVP 335
I+ +SCG H+VA+ R FS+G G GRLG+ + P
Sbjct: 304 -IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQP 345
Score = 76.6 bits (180), Expect = 3e-14
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 33/283 (11%)
Query: 185 VYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPE 244
V A G + GQ GLG + L + V G+ S+ + +G L ++G +
Sbjct: 7 VIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQ 66
Query: 245 YGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHT 304
G LGH + K E+ P + KS + +V IV + G H
Sbjct: 67 RGTLGHPPETKT-----------ESTPSLV-----KS-------LANVKIVQAAIGGWHC 103
Query: 305 VAIDSMKRAFSWGFGGFGRLGHAEQKDEN---VPRLIKYFDTVGR--GVRSVHCGGTYSL 359
+A+D RA++WG +G+ G KDE V R I + VR V GGT+S+
Sbjct: 104 LAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSV 163
Query: 360 AVNDQGALFMFGQTKRTGEANMYPKP--VHDLTGWNIKSVGTSNTSIVIAADDSLIAWGV 417
+ +G ++ +GQ G+ P V L + +VG + ++ + D +L AWG
Sbjct: 164 VLTREGYVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFH-NLALKEDGTLWAWG- 221
Query: 418 SPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 460
+ YG+LG G+ + + P V +D L + +A G H+ L
Sbjct: 222 NNEYGQLGTGD-TQPRSYPIPVQGLDDLTLVDIAAGGWHSTAL 263
Score = 71.7 bits (168), Expect = 1e-12
Identities = 76/334 (22%), Positives = 139/334 (41%), Gaps = 35/334 (10%)
Query: 136 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 195
+G GQLG G + + +V L+ N+ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGT 69
Query: 196 CGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDG 254
G T P+ +K IV+ G + +D G +++G EYGQ G
Sbjct: 70 LGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSK 129
Query: 255 KYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAF 314
+ IPK+ + +T+ ++ G H+V + + +
Sbjct: 130 DETGRPVRRDI---VIPKRC--------------AQQLTVRQVAAGGTHSVVL--TREGY 170
Query: 315 SWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK 374
W +G G + K +VP ++ + VR + G ++LA+ + G L+ +G +
Sbjct: 171 VWTWGQPWPPG--DIKQISVPVRVQGLE----NVRLIAVGAFHNLALKEDGTLWAWGNNE 224
Query: 375 ----RTGEA--NMYPKPVHDLTGWNIKSVGTSN-TSIVIAADDSLIAWGVSPTYGELGMG 427
TG+ YP PV L + + S + + + WG +G LG G
Sbjct: 225 YGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWG-RGEHGRLGFG 283
Query: 428 EINKSTAK-PKEVSRMDSLGITQVAMGYSHTLLL 460
+ +KS+ P++V+ + I QV+ G +H++ L
Sbjct: 284 DNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVAL 317
Score = 43.6 bits (98), Expect = 3e-04
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 309 SMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALF 368
S +WG G G+LG +++ + ++ + VRSV G SLA+ D G LF
Sbjct: 3 SATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFN--VRSVVGGSRNSLAICDDGKLF 60
Query: 369 MFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIV---------IAADDS--LIAWGV 417
+G +R G P+ + T +KS+ +N IV +A DD AWG
Sbjct: 61 TWGWNQR-GTLGHPPETKTESTPSLVKSL--ANVKIVQAAIGGWHCLAVDDQGRAYAWG- 116
Query: 418 SPTYGELGMGEINKSTAKP--KEV----SRMDSLGITQVAMGYSHTLLL 460
YG+ G T +P +++ L + QVA G +H+++L
Sbjct: 117 GNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVL 165
Score = 39.1 bits (87), Expect = 0.006
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 376 TGEANMYPKPVHDLTGWNIKSV-GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTA 434
T E V L +N++SV G S S+ I D L WG + G LG K+ +
Sbjct: 22 TDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQR-GTLGHPPETKTES 80
Query: 435 KPKEVSRMDSLGITQVAMGYSHTLLLCD 462
P V + ++ I Q A+G H L + D
Sbjct: 81 TPSLVKSLANVKIVQAAIGGWHCLAVDD 108
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 96.7 bits (230), Expect = 3e-20
Identities = 82/348 (23%), Positives = 157/348 (45%), Gaps = 34/348 (9%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 181
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 182 TGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHSF 240
+G V CGDN S CG +T+ I +P ++ GTP +V G F++ L G+ ++
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240
Query: 241 GMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCG 300
G +GQLGH +T+ + + ++ K I PV V ++ G
Sbjct: 241 GSNTHGQLGHG----------------DTLDRPVPKVVEFLKT--IGPV-----VQIAAG 277
Query: 301 NNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLA 360
++ +A+ +S+G G LGH EQ+DE PR+I+ F G + V G +++A
Sbjct: 278 PSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVA 337
Query: 361 VNDQGALFMFGQ----TKRTGEAN--MYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIA 414
++ G ++ +G+ G+ N + P+ + +L V + + L+
Sbjct: 338 LDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLY 397
Query: 415 WGVSPTYGELGMGE--INKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 460
+G LG + ++ +P+ + + ++QV+ G HT+++
Sbjct: 398 GFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVV 445
Score = 58.0 bits (134), Expect = 1e-08
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 182
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 183 GCVYACGDNKSGQCGLGN--TTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHS 239
G +Y G G G + + ++L+P ++ + +V G ++++ G +
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFG 453
Query: 240 FGMPEYGQLGHNT 252
FG E QLGH++
Sbjct: 454 FGDNERAQLGHDS 466
Score = 46.0 bits (104), Expect = 6e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 114 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 169
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 170 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 211
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 96.7 bits (230), Expect = 3e-20
Identities = 82/348 (23%), Positives = 157/348 (45%), Gaps = 34/348 (9%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 181
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 182 TGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHSF 240
+G V CGDN S CG +T+ I +P ++ GTP +V G F++ L G+ ++
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTC 240
Query: 241 GMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCG 300
G +GQLGH +T+ + + ++ K I PV V ++ G
Sbjct: 241 GSNTHGQLGHG----------------DTLDRPVPKVVEFLKT--IGPV-----VQIAAG 277
Query: 301 NNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLA 360
++ +A+ +S+G G LGH EQ+DE PR+I+ F G + V G +++A
Sbjct: 278 PSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVA 337
Query: 361 VNDQGALFMFGQ----TKRTGEAN--MYPKPVHDLTGWNIKSVGTSNTSIVIAADDSLIA 414
++ G ++ +G+ G+ N + P+ + +L V + + L+
Sbjct: 338 LDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLY 397
Query: 415 WGVSPTYGELGMGE--INKSTAKPKEVSRMDSLGITQVAMGYSHTLLL 460
+G LG + ++ +P+ + + ++QV+ G HT+++
Sbjct: 398 GFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVV 445
Score = 58.0 bits (134), Expect = 1e-08
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 182
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 183 GCVYACGDNKSGQCGLGN--TTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHS 239
G +Y G G G + + ++L+P ++ + +V G ++++ G +
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFG 453
Query: 240 FGMPEYGQLGHNT 252
FG E QLGH++
Sbjct: 454 FGDNERAQLGHDS 466
Score = 46.0 bits (104), Expect = 6e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 114 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 169
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 170 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 211
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 96.3 bits (229), Expect = 4e-20
Identities = 80/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+VLV+++GE +++G G+LG G P+ + ++G A G HT
Sbjct: 294 CGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQKPKFISSVRGLGFKSLACGDFHTCA 353
Query: 179 VTDTGCVYACGD--NKSGQCGLGN-TTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG 235
+T +G +Y+ GD + G GN ++ I K G + V CG + ++ +G
Sbjct: 354 ITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWHTAVVASSG 413
Query: 236 NLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIV 295
L +FG +G LGH D + ST + E++ I L + K G +V
Sbjct: 414 QLFTFGDGTFGALGHG-DRR----STSVPREVESL---IGLIVTKVACGV---WHTAAVV 462
Query: 296 DLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGG 355
+++ + S + F+WG G G+LGH + + +P + + V CG
Sbjct: 463 EVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECV--ISLTNENICQVACGH 520
Query: 356 TYSLAVNDQGALFMFGQT------KRTGEANMYPKPVHDLTGWNIKSVGTSNTSI-VIAA 408
+ +++ +G ++ G T T + N + D+ +++ + + + V+ +
Sbjct: 521 SLTVSRTSRGHVYTMGSTAYGQLGNPTAKGNFPERVEGDIVEASVEEIACGSYHVAVLTS 580
Query: 409 DDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ WG G+LG G + ++ +P V + + + G + T ++C
Sbjct: 581 KSEIYTWG-KGLNGQLGHGNV-ENKREPAVVGFLREKQVKAITCGSNFTAVIC 631
Score = 82.2 bits (194), Expect = 7e-16
Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Query: 281 SKDGYITPVKDVTIV----DLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPR 336
++D + + TIV +++CG H V + FSWG G G+LGH + D P+
Sbjct: 272 TEDALLPKALESTIVLDAQNIACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQKPK 331
Query: 337 LIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKRT----GEAN----MYPKPV-H 387
I G G +S+ CG ++ A+ G L+ +G G N PK V
Sbjct: 332 FIS--SVRGLGFKSLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTG 389
Query: 388 DLTGWNIKSV--GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSL 445
DL G + V G +T+ V+A+ L +G T+G LG G+ +ST+ P+EV + L
Sbjct: 390 DLQGLYVSDVACGPWHTA-VVASSGQLFTFG-DGTFGALGHGD-RRSTSVPREVESLIGL 446
Query: 446 GITQVAMGYSHTLLLCDNNIEEVKQKLDT 474
+T+VA G HT + + E + ++D+
Sbjct: 447 IVTKVACGVWHTAAVVEVTNEASEAEVDS 475
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 94.3 bits (224), Expect = 2e-19
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 50/261 (19%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+ L++ G +TFG G LG GD T P V L G I + G HT
Sbjct: 396 CGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAA 455
Query: 179 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPT----RIKYNGTPIVKVG 222
V + +G ++ GD + G G+ P+ LKPT I YN K+
Sbjct: 456 VVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHGDKDPR-LKPTCVPALIDYN---FHKIA 511
Query: 223 CGAEFSMILDCNGNLHSFGMPEYGQLGH-NTDGKY-FVTSTKLSFHFETIPKQITLYIQK 280
CG ++ L +G + + G YGQLG+ TDGK + KL+ F
Sbjct: 512 CGHSLTVGLTTSGQVFTMGSTVYGQLGNLQTDGKLPCLVEDKLASEF------------- 558
Query: 281 SKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKY 340
+ ++SCG H A+ S ++WG G GRLGH + +D VP +++
Sbjct: 559 -------------VEEISCGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEA 605
Query: 341 FDTVGRGVRSVHCGGTYSLAV 361
R V+ + CG Y+ A+
Sbjct: 606 LK--DRHVKYIACGSNYTAAI 624
Score = 80.2 bits (189), Expect = 3e-15
Identities = 90/355 (25%), Positives = 149/355 (41%), Gaps = 29/355 (8%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKG-KNIIHAAVGRHHTL 177
C H+ V+ +GE +T+G + G+LG G P LV L ++ A G HT
Sbjct: 288 CGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTC 347
Query: 178 FVTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRI--KYNGTPIVKVGCGAEFSMILDC 233
VT G +Y GD + G G G+ + P RI G + V CG + ++
Sbjct: 348 AVTLAGELYTWGDGTHNVGLLGHGSDISHWI-PKRIAGSLEGLHVASVSCGPWHTALITS 406
Query: 234 NGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVT 293
G L +FG +G LGH + + E++ T+ + S + T
Sbjct: 407 YGRLFTFGDGTFGVLGHGDK-----ETVQYPREVESLSGLRTIAV--SCGVWHT----AA 455
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQ----KDENVPRLIKY-FDTVGRGV 348
+V++ +++ ++ S K F+WG G RLGH ++ K VP LI Y F + G
Sbjct: 456 VVEIIVTQSNSSSVSSGK-LFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACG- 513
Query: 349 RSVHCGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHD-LTGWNIKSVGTSNTSI-VI 406
S+ G T S V G+ ++GQ P V D L ++ + + +
Sbjct: 514 HSLTVGLTTSGQVFTMGST-VYGQLGNLQTDGKLPCLVEDKLASEFVEEISCGAYHVAAL 572
Query: 407 AADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ + + WG G LG G++ + P V + + +A G ++T +C
Sbjct: 573 TSRNEVYTWGKGAN-GRLGHGDL-EDRKVPTIVEALKDRHVKYIACGSNYTAAIC 625
Score = 58.8 bits (136), Expect = 7e-09
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
++CG H + F+WG GRLGH KD PRL++ T V V CG
Sbjct: 286 IACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESL-TATSSVDFVACGEF 344
Query: 357 YSLAVNDQGALFMFGQ-TKRTG-------EANMYPKPV-HDLTGWNIKSV--GTSNTSIV 405
++ AV G L+ +G T G ++ PK + L G ++ SV G +T++
Sbjct: 345 HTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHTAL- 403
Query: 406 IAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 457
I + L +G T+G LG G+ ++ P+EV + L V+ G HT
Sbjct: 404 ITSYGRLFTFG-DGTFGVLGHGD-KETVQYPREVESLSGLRTIAVSCGVWHT 453
Score = 58.4 bits (135), Expect = 1e-08
Identities = 90/366 (24%), Positives = 145/366 (39%), Gaps = 59/366 (16%)
Query: 131 GEAYTFGRNACG---QLGFGDT---VTRSVPELVPELKGKNII----HAAVGRHHTLFVT 180
G+ Y +G C ++G +T LVP+ NI+ A G H FVT
Sbjct: 238 GDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVT 297
Query: 181 DTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVK-VGCGAEFSMILDCNGNLH 238
G ++ G+ G+ G G + P ++ T V V CG + + G L+
Sbjct: 298 RQGEIFTWGEESGGRLGHG-IGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELY 356
Query: 239 SFGMPEY--GQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVD 296
++G + G LGH +D ++ IPK+I S +G + +
Sbjct: 357 TWGDGTHNVGLLGHGSDISHW------------IPKRIA----GSLEG-------LHVAS 393
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
+SCG HT I S R F++G G FG LGH +++ PR ++ G +V CG
Sbjct: 394 VSCGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVESLS--GLRTIAVSCGVW 451
Query: 357 YSLAVND------------QGALFMF--GQTKRTGEANMYP--KP--VHDLTGWNIKSVG 398
++ AV + G LF + G R G + P KP V L +N +
Sbjct: 452 HTAAVVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIA 511
Query: 399 TSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTL 458
++ V + S YG+LG + + E ++ S + +++ G H
Sbjct: 512 CGHSLTVGLTTSGQVFTMGSTVYGQLGNLQTDGKLPCLVE-DKLASEFVEEISCGAYHVA 570
Query: 459 LLCDNN 464
L N
Sbjct: 571 ALTSRN 576
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 93.1 bits (221), Expect = 4e-19
Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 26/349 (7%)
Query: 121 AGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVT 180
A H+ LV+ +GE + +G G+LG + P+ V L+ + A H T VT
Sbjct: 301 AKHAALVTRQGEVFCWGNGNSGKLGLKVNIDIDHPKRVESLEDVAVRSVACSDHQTCAVT 360
Query: 181 DTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSF 240
++G +Y G + G + K + + ++ V CGA + I+ +G L ++
Sbjct: 361 ESGELYLWGID-GGTIEQSGSQFLTRKISDVLGGSLTVLSVACGAWHTAIVTSSGQLFTY 419
Query: 241 GMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQI-TLYIQKSKDGYITPVKDVTIVDLSC 299
G +G LGH S T PK++ +L K P IV+ +
Sbjct: 420 GSGTFGVLGHG------------SLESVTKPKEVESLRRMKVISVSCGPWHTAAIVE-TA 466
Query: 300 GNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSL 359
+ S + F+WG G GRLGHA+ K + VP + + + V CG T ++
Sbjct: 467 NDRKFYNAKSCGKLFTWGDGDKGRLGHADSKRKLVPTCVT--ELIDHDFIKVSCGWTLTV 524
Query: 360 AVNDQGALFMFGQT--KRTGEANMYPKPVH----DLTGWNIKSVGTSNTSI-VIAADDSL 412
A++ G ++ G + + G K V+ +LT +K + + + + V+ + ++
Sbjct: 525 ALSISGTVYTMGSSIHGQLGCPRAKDKSVNVVLGNLTRQFVKDIASGSHHVAVLTSFGNV 584
Query: 413 IAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
WG G+LG+G++ + P V + + +A G + T +C
Sbjct: 585 YTWGKGMN-GQLGLGDV-RDRNSPVLVEPLGDRLVESIACGLNLTAAIC 631
Score = 70.5 bits (165), Expect = 2e-12
Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 42/257 (16%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C A H+ +V+ G+ +T+G G LG G + + P+ V L+ +I + G HT
Sbjct: 402 CGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVTKPKEVESLRRMKVISVSCGPWHTAA 461
Query: 179 VTDT------------GCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAE 226
+ +T G ++ GD G+ G ++ +++ + +KV CG
Sbjct: 462 IVETANDRKFYNAKSCGKLFTWGDGDKGRLGHADSKRKLVPTCVTELIDHDFIKVSCGWT 521
Query: 227 FSMILDCNGNLHSFGMPEYGQLG--HNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
++ L +G +++ G +GQLG D V L+ F
Sbjct: 522 LTVALSISGTVYTMGSSIHGQLGCPRAKDKSVNVVLGNLTRQF----------------- 564
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
VKD+ + G++H + S ++WG G G+LG + +D N P L++
Sbjct: 565 ----VKDI-----ASGSHHVAVLTSFGNVYTWGKGMNGQLGLGDVRDRNSPVLVEPLG-- 613
Query: 345 GRGVRSVHCGGTYSLAV 361
R V S+ CG + A+
Sbjct: 614 DRLVESIACGLNLTAAI 630
Score = 67.3 bits (157), Expect = 2e-11
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
+ +S G H + F WG G G+LG D + P+ ++ + V VRSV C
Sbjct: 294 VQSISLGAKHAALVTRQGEVFCWGNGNSGKLGLKVNIDIDHPKRVESLEDV--AVRSVAC 351
Query: 354 GGTYSLAVNDQGALFMFGQTKRTGE---ANMYPKPVHDLTGWNIK----SVGTSNTSIVI 406
+ AV + G L+++G T E + + + D+ G ++ + G +T+IV
Sbjct: 352 SDHQTCAVTESGELYLWGIDGGTIEQSGSQFLTRKISDVLGGSLTVLSVACGAWHTAIV- 410
Query: 407 AADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
+ L +G S T+G LG G + +S KPKEV + + + V+ G HT + +
Sbjct: 411 TSSGQLFTYG-SGTFGVLGHGSL-ESVTKPKEVESLRRMKVISVSCGPWHTAAIVE 464
Score = 44.4 bits (100), Expect = 2e-04
Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 155 PELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-Y 213
P+L+ ++ ++G H VT G V+ G+ SG+ GL I P R++
Sbjct: 283 PKLLESATMFDVQSISLGAKHAALVTRQGEVFCWGNGNSGKLGL-KVNIDIDHPKRVESL 341
Query: 214 NGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQ 273
+ V C + + +G L+ +G+ + G + G F+T ++
Sbjct: 342 EDVAVRSVACSDHQTCAVTESGELYLWGI-DGGTI--EQSGSQFLT------------RK 386
Query: 274 ITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDEN 333
I+ + S +T++ ++CG HT + S + F++G G FG LGH +
Sbjct: 387 ISDVLGGS----------LTVLSVACGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVT 436
Query: 334 VPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKRTGE 378
P+ ++ + V SV CG ++ A+ + F K G+
Sbjct: 437 KPKEVESLRRM--KVISVSCGPWHTAAIVETANDRKFYNAKSCGK 479
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 92.7 bits (220), Expect = 5e-19
Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 28/353 (7%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G +H+
Sbjct: 338 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCA 397
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY--NGTPIVKVGCGAEFSMILDCNGN 236
VT +G +Y G G G GN + P R+ + G + + CG + ++ G
Sbjct: 398 VTLSGDLYTWGKGDFGILGHGNEVSHWV-PKRVNFLMEGIHVSSIACGPYHTAVVTSAGQ 456
Query: 237 LHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQI-TLYIQKSKDGYITPVKDVTIV 295
L +FG +G LGH F IP+++ +L ++ +V
Sbjct: 457 LFTFGDGTFGVLGHGDRKSVF------------IPREVDSLKGLRTVRAACGVWHTAAVV 504
Query: 296 DLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGG 355
++ G++ + S K F+WG G RLGH +++ + VP + V V CG
Sbjct: 505 EVMVGSSSSSNCSSGK-LFTWGDGDKSRLGHGDKEPKLVPTCVAAL--VEPNFCQVACGH 561
Query: 356 TYSLAVNDQGALF-----MFGQTKRTGEANMYPKPVH-DLTGWNIKSVGTSNTSI-VIAA 408
+ ++A+ G ++ ++GQ P V L ++ + + V+ +
Sbjct: 562 SLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVDGKLHKSFVEEIACGAYHVAVLTS 621
Query: 409 DDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
+ WG + G LG G+ + + P V + + +A G + T +C
Sbjct: 622 RTEVYTWG-KGSNGRLGHGDADDRNS-PTLVESLKDKQVKSIACGSNFTAAVC 672
Score = 70.9 bits (166), Expect = 2e-12
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
+ +++CG H V + +FSWG GRLGH + P+LI +T + V C
Sbjct: 333 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTT--NIELVAC 390
Query: 354 GGTYSLAVNDQGALFMFGQTK--RTGEAN----MYPKPVHDL-TGWNIKSV--GTSNTSI 404
G +S AV G L+ +G+ G N PK V+ L G ++ S+ G +T++
Sbjct: 391 GEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAV 450
Query: 405 VIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHT 457
V +A L +G T+G LG G+ KS P+EV + L + A G HT
Sbjct: 451 VTSA-GQLFTFG-DGTFGVLGHGD-RKSVFIPREVDSLKGLRTVRAACGVWHT 500
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 218 IVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLY 277
+ + CG + ++++ G S+G G+LGH D
Sbjct: 333 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSN---------------------- 370
Query: 278 IQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRL 337
+Q K I + I ++CG H+ A+ ++WG G FG LGH + VP+
Sbjct: 371 VQHPK--LIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKR 428
Query: 338 IKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFG 371
+ + G V S+ CG ++ V G LF FG
Sbjct: 429 VNFL-MEGIHVSSIACGPYHTAVVTSAGQLFTFG 461
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 91.5 bits (217), Expect = 1e-18
Identities = 90/319 (28%), Positives = 138/319 (43%), Gaps = 29/319 (9%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C H+ V+ +G + +G N GQLG G V R P+ V +L+ + + + G T
Sbjct: 68 CGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAA 127
Query: 179 VTD----TGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCN 234
+ + G + GQ G+ P++ T I +V CG + L
Sbjct: 128 IAEPRENDGTLSTSRLWVWGQ-NQGSNLPRLFSGAFPA--TTAIRQVSCGTAHVVALSEE 184
Query: 235 GNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTI 294
G L ++G E GQLG VT L P+ I Y K D VK I
Sbjct: 185 GLLQAWGYNEQGQLGRG------VTCEGLQ-----APRVINAY-AKFLDEAPELVK---I 229
Query: 295 VDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKD---ENVPRLIKYFDTVGRGVRSV 351
+ LSCG HT A+ ++WG G G+LGH + E +PR + D G ++ V
Sbjct: 230 MQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLD--GVSMKEV 287
Query: 352 HCGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSI-VIAADD 410
CGG ++ A++ +GAL+ +G + G+ + P+ + N + N + VI D
Sbjct: 288 ACGGVHTCALSLEGALYAWG-GGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDV 346
Query: 411 SLIAWGVSPTYGELGMGEI 429
L+A G S T + G I
Sbjct: 347 RLVACGHSHTLVYMREGRI 365
Score = 72.9 bits (171), Expect = 4e-13
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTR-SVPELV----------PELKGKNII 167
C H V +SEEG +G N GQLG G T P ++ PEL I+
Sbjct: 173 CGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELV--KIM 230
Query: 168 HAAVGRHHTLFVTDTGCVYACGDNKSGQCG---LGNTTPQILKPTRIKYNGTPIVKVGCG 224
+ G +HT ++D G VY G GQ G L + +++ + +G + +V CG
Sbjct: 231 QLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACG 290
Query: 225 AEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDG 284
+ L G L+++G + GQLG +F + + S E + + + + + +
Sbjct: 291 GVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGS---EMLLRNVPVLVIPT--- 344
Query: 285 YITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV 344
DV +V +CG++HT+ R WG+ +G+ + + P + + V
Sbjct: 345 ------DVRLV--ACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDW--CV 394
Query: 345 GRGVRSVHCGGTYSLAVNDQGAL 367
G+ VR + GG +S + D +L
Sbjct: 395 GQ-VRKLAAGGGHSAVLTDAFSL 416
Score = 58.8 bits (136), Expect = 7e-09
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVT---RSVPELVPELKGKNIIHA 169
+++ C H+ +S+ GE YT+G + GQLG + +P V L G ++
Sbjct: 228 KIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEV 287
Query: 170 AVGRHHTLFVTDTGCVYACGDNKSGQCGLG----------NTTPQILKPTRIKYNGTPIV 219
A G HT ++ G +YA G ++GQ GLG N + +L+ + T +
Sbjct: 288 ACGGVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVR 347
Query: 220 KVGCGAEFSMILDCNGNLHSFGMPEYGQ 247
V CG +++ G + +G YGQ
Sbjct: 348 LVACGHSHTLVYMREGRICGWGYNSYGQ 375
Score = 55.6 bits (128), Expect = 7e-08
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 295 VDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCG 354
+D+SCG HT A+ S F+WG +G+LG + P+ +K + V+ V CG
Sbjct: 64 LDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQS--EFVKFVSCG 121
Query: 355 GTYSLAV-----ND----QGALFMFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIV 405
+ A+ ND L+++GQ + + ++ T S GT++ +
Sbjct: 122 AFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSCGTAHV-VA 180
Query: 406 IAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRM--------DSLGITQVAMGYSHT 457
++ + L AWG + G+LG G + P+ ++ + + I Q++ G HT
Sbjct: 181 LSEEGLLQAWGYN-EQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHT 239
Query: 458 LLLCD 462
L D
Sbjct: 240 AALSD 244
Score = 41.5 bits (93), Expect = 0.001
Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 54/303 (17%)
Query: 185 VYACGDNKSGQCGLGNTTPQILKPTRI--KYNGTPI------VKVGCGAEFSMILDCNGN 236
+Y G N+SGQ G + P ++ + G P + + CG E + + +G+
Sbjct: 22 IYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREHTAAVASDGS 81
Query: 237 LHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVD 296
L ++G EYGQLG T+ K + + + ++ S + T +
Sbjct: 82 LFAWGANEYGQLGDGTE-----VGRKHPKKVKQLQSEFVKFV--SCGAFCT-----AAIA 129
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
N+ T+ S R + WG + + N+PRL +R V CG
Sbjct: 130 EPRENDGTL---STSRLWVWG----------QNQGSNLPRLFSGAFPATTAIRQVSCGTA 176
Query: 357 YSLAVNDQGALFMFGQTKR-------TGEANMYPKPVH----------DLTGWNIKSVGT 399
+ +A++++G L +G ++ T E P+ ++ +L S G
Sbjct: 177 HVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGE 236
Query: 400 SNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAK--PKEVSRMDSLGITQVAMGYSHT 457
+T+ + A + + WG+ + G+LG + + P+ V +D + + +VA G HT
Sbjct: 237 YHTAALSDAGE-VYTWGLG-SMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHT 294
Query: 458 LLL 460
L
Sbjct: 295 CAL 297
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 304 TVAIDSMKRAFSWGFGGFGRLGHAEQ-KDENVPRLIK---YFDTVGRGVR--SVHCGGTY 357
+V+I + + WG+ G+ G EQ K +P+ + + G R + CG +
Sbjct: 13 SVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREH 72
Query: 358 SLAVNDQGALFMFG 371
+ AV G+LF +G
Sbjct: 73 TAAVASDGSLFAWG 86
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 89.8 bits (213), Expect = 3e-18
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 36/282 (12%)
Query: 99 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 158
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 143 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 198
Query: 159 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIK 212
+ I A HT +T++G +Y G + G+ GLG N + P+++K
Sbjct: 199 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 258
Query: 213 YNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPK 272
P+ V CG F+M L G L ++G +LG + +E +P
Sbjct: 259 ALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDN----------LGGWEPMP- 307
Query: 273 QITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDE 332
+ ++ V I ++CG H++A+ + SWG GG G+LG + +++
Sbjct: 308 -------------VPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQ 354
Query: 333 NVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK 374
VP I+ + + + GG+ S A+ D G L+M+G K
Sbjct: 355 KVPTEIEAL--ADKKIVFIASGGSSSAAITDGGELWMWGNAK 394
Score = 74.5 bits (175), Expect = 1e-13
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
++ G H+VA+ F+WG+GGFG LGH E VPR + D+ + ++ GT
Sbjct: 157 IALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVD--DSWDCKISAIATSGT 214
Query: 357 YSLAVNDQGALFMFGQTKRTGEANMYP-KPVHDLTGWNIKS------VGTSNTS------ 403
++ A+ + G L+M+G+ + G + P + ++ G ++ S V ++ S
Sbjct: 215 HTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFT 274
Query: 404 IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
+ + + L WG + Y ELG G+ N +P V ++ + ITQ+A G H+L L +
Sbjct: 275 MALTKEGQLWNWGANSNY-ELGRGD-NLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 331
Score = 58.0 bits (134), Expect = 1e-08
Identities = 81/363 (22%), Positives = 151/363 (41%), Gaps = 38/363 (10%)
Query: 112 YRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAV 171
+R+ +S C HS L + G+ + +G+ G+LGFG + VP L P + +I A+
Sbjct: 102 FRIGIS-CGLFHSGLTID-GDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIAL 159
Query: 172 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYN-GTPIVKVGCGAEFSMI 230
G H++ +T G V+ G G G T +++ P R+ + I + +
Sbjct: 160 GGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELV-PRRVDDSWDCKISAIATSGTHTAA 218
Query: 231 LDCNGNLHSFGMPEY-GQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPV 289
+ +G L+ +G E G+LG G+ LS +P ++
Sbjct: 219 ITESGELYMWGREEGDGRLGLGP-GRGPNEGGGLS-----VPSKVKALT----------- 261
Query: 290 KDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVR 349
V + +SCG T+A+ + ++WG LG + P + + G +
Sbjct: 262 --VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLE--GVRIT 317
Query: 350 SVHCGGTYSLAVNDQGALFMFGQ--TKRTGEANM----YPKPVHDLTGWNIKSVGTSNTS 403
+ CGG +SLA+ ++G + +G + G +++ P + L I + + +S
Sbjct: 318 QIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASGGSS 377
Query: 404 IVIAAD-DSLIAWGVSPTY--GELGMGEINKSTAKPKEVSRMDSL---GITQVAMGYSHT 457
D L WG + + G G+ EI + + ++ D + +++G SH
Sbjct: 378 SAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNFLTEEDECQPHKVISISIGASHA 437
Query: 458 LLL 460
L L
Sbjct: 438 LCL 440
Score = 53.6 bits (123), Expect = 3e-07
Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 44/310 (14%)
Query: 167 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAE 226
I + G H+ D G ++ G G+ G G + + I + G
Sbjct: 104 IGISCGLFHSGLTID-GDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGL 162
Query: 227 FSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYI 286
S+ L G++ ++G +G LGH + E +P+++ D +
Sbjct: 163 HSVALTHQGDVFTWGYGGFGALGHKV------------YTRELVPRRVD-------DSW- 202
Query: 287 TPVKDVTIVDLSCGNNHTVAIDSMKRAFSWG-FGGFGRLGHAEQKDEN------VPRLIK 339
D I ++ HT AI + WG G GRLG + N VP +K
Sbjct: 203 ----DCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 258
Query: 340 YFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKR----TGE--ANMYPKPVHDLTGWN 393
TV V SV CGG +++A+ +G L+ +G G+ P PV L G
Sbjct: 259 AL-TV--PVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVR 315
Query: 394 IKSVGTSN-TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAM 452
I + S+ + + +++WG +G+LG + ++ P E+ + I +A
Sbjct: 316 ITQIACGGYHSLALTEEGKVLSWG-HGGHGQLGSSSL-RNQKVPTEIEALADKKIVFIAS 373
Query: 453 GYSHTLLLCD 462
G S + + D
Sbjct: 374 GGSSSAAITD 383
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 85.4 bits (202), Expect = 7e-17
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
RLI G A H++ + E+G +G N GQLG GDT S P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAG 256
Query: 173 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRIKYNG-TPIVKVGCGAEFSMI 230
H+ +TD G VY G + G+ GLG N + P ++ I++V CG S+
Sbjct: 257 GWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVA 316
Query: 231 LDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITL-YIQKSKDGYITPV 289
L +G + SFG ++G+LG+ G+ T L + P + + + + ++G
Sbjct: 317 LTRDGRIFSFGRGDHGRLGY---GRKVTTGQPLELPIKIPPPEGSFNHTDEEEEG----- 368
Query: 290 KDVTIVDLSCGNNHTVAIDSMK 311
+ ++CG HT+AI K
Sbjct: 369 -KWSAKSIACGGRHTLAIVEWK 389
Score = 81.4 bits (192), Expect = 1e-15
Identities = 84/337 (24%), Positives = 156/337 (46%), Gaps = 39/337 (11%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 171
R +VSG + +S+ + ++G +T+G N G LG +T T ++P V L I AA+
Sbjct: 41 RSVVSG--SRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAI 98
Query: 172 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMIL 231
G H L V D G YA G N+ GQCG ++ +P R ++ C + ++
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDI----VIPKRCAPKLTVRQ 154
Query: 232 DCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKD 291
G HS + G + T G+ + KQI++ ++ + +++
Sbjct: 155 VAAGGTHSVVLTREGHVW--TWGQPWPPGD---------IKQISVPVR------VQGLEN 197
Query: 292 VTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSV 351
V ++ + G H +A++ R +WG +G+LG + + + P ++ D + + +
Sbjct: 198 VRLI--AVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDL--TLVDI 253
Query: 352 HCGGTYSLAVNDQGALFMFGQTK--RTG------EANMYPKPVHDLTGWNIKSVGTSNT- 402
GG +S A+ D+G ++ +G+ + R G + M P+ V+ L +I V T
Sbjct: 254 AAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTH 313
Query: 403 SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEV 439
S+ + D + ++G +G LG G +T +P E+
Sbjct: 314 SVALTRDGRIFSFG-RGDHGRLGYGR-KVTTGQPLEL 348
Score = 79.8 bits (188), Expect = 4e-15
Identities = 74/292 (25%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLH 238
VT T + A G + GQ G+G + + V G+ S+ + +G +
Sbjct: 2 VTATSII-AWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60
Query: 239 SFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLS 298
++G + G LGH + K E IP ++ + +V I +
Sbjct: 61 TWGWNQRGTLGHQPETKT-----------ENIPSRVKA------------LANVKITQAA 97
Query: 299 CGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGR------GVRSVH 352
G H +A+D RA++WG +G+ G KDE + R ++ + + VR V
Sbjct: 98 IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDE-MGRPVRRDIVIPKRCAPKLTVRQVA 156
Query: 353 CGGTYSLAVNDQGALFMFGQTKRTGEANMYPKP--VHDLTGWNIKSVGTSNTSIVIAADD 410
GGT+S+ + +G ++ +GQ G+ P V L + +VG + ++ + D
Sbjct: 157 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFH-NLALEEDG 215
Query: 411 SLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
L+AWG + YG+LG G+ + T+ P V +D L + +A G H+ L D
Sbjct: 216 RLLAWG-NNEYGQLGTGD-TQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTD 265
Score = 64.9 bits (151), Expect = 1e-10
Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 39/336 (11%)
Query: 136 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 195
+G GQLG G + +V L+ ++ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRGT 69
Query: 196 CGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDG 254
G T P+R+K I + G + +D G +++G EYGQ G
Sbjct: 70 LGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLK 129
Query: 255 KYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAF 314
+ IPK+ +T+ ++ G H+V + +
Sbjct: 130 DEMGRPVRRDI---VIPKRC--------------APKLTVRQVAAGGTHSVVLTREGHVW 172
Query: 315 SWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK 374
+WG + K +VP ++ + VR + G ++LA+ + G L +G +
Sbjct: 173 TWG----QPWPPGDIKQISVPVRVQGLE----NVRLIAVGAFHNLALEEDGRLLAWGNNE 224
Query: 375 ----RTGEA--NMYPKPVH---DLTGWNIKSVGTSNTSIVIAADDSLIAWGVSPTYGELG 425
TG+ +P PV DLT +I + G +T++ + + WG +G LG
Sbjct: 225 YGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGE--VYGWG-RGEHGRLG 281
Query: 426 MGEINKSTAK-PKEVSRMDSLGITQVAMGYSHTLLL 460
+G+ +KS+ P++V+ + I QV+ G +H++ L
Sbjct: 282 LGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVAL 317
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 80.6 bits (190), Expect = 2e-15
Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 43/289 (14%)
Query: 99 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 158
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 74 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 129
Query: 159 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIK 212
+ I A HT +T++G +Y G + G+ GLG N + P+++K
Sbjct: 130 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 189
Query: 213 YNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPK 272
P+ V CG F+M L G L ++G +LG + +E +P
Sbjct: 190 ALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDN----------LGGWEPMP- 238
Query: 273 QITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDE 332
+ ++ V I ++CG H++A+ + SWG GG G+LG + +++
Sbjct: 239 -------------VPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQ 285
Query: 333 NVPRLIKYFDTVGRGVRSVHCGGTYSLAV-------NDQGALFMFGQTK 374
VP I+ + + + GG+ S A+ D G L+M+G K
Sbjct: 286 KVPTEIEAL--ADKKIVFIASGGSSSAAITGWDWFLTDGGELWMWGNAK 332
Score = 74.5 bits (175), Expect = 1e-13
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
++ G H+VA+ F+WG+GGFG LGH E VPR + D+ + ++ GT
Sbjct: 88 IALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVD--DSWDCKISAIATSGT 145
Query: 357 YSLAVNDQGALFMFGQTKRTGEANMYP-KPVHDLTGWNIKS------VGTSNTS------ 403
++ A+ + G L+M+G+ + G + P + ++ G ++ S V ++ S
Sbjct: 146 HTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFT 205
Query: 404 IVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
+ + + L WG + Y ELG G+ N +P V ++ + ITQ+A G H+L L +
Sbjct: 206 MALTKEGQLWNWGANSNY-ELGRGD-NLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 262
Score = 55.6 bits (128), Expect = 7e-08
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 295 VDLSCGNNHT-VAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHC 353
+ +SCG H+ + ID + WG G GRLG ++ VP L F+ +R +
Sbjct: 35 IGISCGLFHSGLTIDG--DLWIWGKGDGGRLGFGQENSVFVPNLNPLFEE--HSIRCIAL 90
Query: 354 GGTYSLAVNDQGALFMFGQ------TKRTGEANMYPKPVHDLTGWNIKSVGTSNT-SIVI 406
GG +S+A+ QG +F +G + + P+ V D I ++ TS T + I
Sbjct: 91 GGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAI 150
Query: 407 AADDSLIAWGVSPTYGELGMG 427
L WG G LG+G
Sbjct: 151 TESGELYMWGREEGDGRLGLG 171
Score = 53.2 bits (122), Expect = 4e-07
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 26/262 (9%)
Query: 112 YRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAV 171
+R+ +S C HS L + G+ + +G+ G+LGFG + VP L P + +I A+
Sbjct: 33 FRIGIS-CGLFHSGLTID-GDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIAL 90
Query: 172 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYN-GTPIVKVGCGAEFSMI 230
G H++ +T G V+ G G G T +++ P R+ + I + +
Sbjct: 91 GGLHSVALTHQGDVFTWGYGGFGALGHKVYTRELV-PRRVDDSWDCKISAIATSGTHTAA 149
Query: 231 LDCNGNLHSFGMPE-YGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPV 289
+ +G L+ +G E G+LG G+ LS +P ++
Sbjct: 150 ITESGELYMWGREEGDGRLGLG-PGRGPNEGGGLS-----VPSKV-------------KA 190
Query: 290 KDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVR 349
V + +SCG T+A+ + ++WG LG + P + + G +
Sbjct: 191 LTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLE--GVRIT 248
Query: 350 SVHCGGTYSLAVNDQGALFMFG 371
+ CGG +SLA+ ++G + +G
Sbjct: 249 QIACGGYHSLALTEEGKVLSWG 270
Score = 51.6 bits (118), Expect = 1e-06
Identities = 70/303 (23%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 167 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAE 226
I + G H+ D G ++ G G+ G G + + I + G
Sbjct: 35 IGISCGLFHSGLTID-GDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGL 93
Query: 227 FSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYI 286
S+ L G++ ++G +G LGH + E +P+++ D +
Sbjct: 94 HSVALTHQGDVFTWGYGGFGALGHKV------------YTRELVPRRVD-------DSW- 133
Query: 287 TPVKDVTIVDLSCGNNHTVAIDSMKRAFSWG-FGGFGRLGHAEQKDEN------VPRLIK 339
D I ++ HT AI + WG G GRLG + N VP +K
Sbjct: 134 ----DCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 189
Query: 340 YFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKR----TGE--ANMYPKPVHDLTGWN 393
TV V SV CGG +++A+ +G L+ +G G+ P PV L G
Sbjct: 190 AL-TV--PVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVR 246
Query: 394 IKSVGTSN-TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAM 452
I + S+ + + +++WG +G+LG + ++ P E+ + I +A
Sbjct: 247 ITQIACGGYHSLALTEEGKVLSWG-HGGHGQLGSSSL-RNQKVPTEIEALADKKIVFIAS 304
Query: 453 GYS 455
G S
Sbjct: 305 GGS 307
Score = 41.9 bits (94), Expect = 0.001
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 113 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 172
R+ C HS+ ++EEG+ ++G GQLG + VP + L K I+ A G
Sbjct: 246 RITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASG 305
Query: 173 RHHTL-------FVTDTGCVYACGDNKSGQCGL 198
+ F+TD G ++ G+ K Q G+
Sbjct: 306 GSSSAAITGWDWFLTDGGELWMWGNAKDFQLGV 338
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 79.8 bits (188), Expect = 4e-15
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C HS +++ G TFG GQ G G+T + P V E+K + A G HT+
Sbjct: 317 CGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVAAGLWHTIC 376
Query: 179 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYN--GTPIVKVGCGAEFSMILDCNGN 236
++ G VYA G N+ GQ G G +IL N G V CGA S +L +G
Sbjct: 377 ISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAEDGQ 436
Query: 237 LHSFGMPEYGQLG-HNTDGKYFVTSTKL 263
L +G +YGQLG +T+ + T +L
Sbjct: 437 LLCWGWNKYGQLGLGDTNDRNIPTQVQL 464
Score = 76.6 bits (180), Expect = 3e-14
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGT 356
+SCG H+ AI ++G+G +G+ GH D+ P + +V + SV G
Sbjct: 315 ISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVR--MESVAAGLW 372
Query: 357 YSLAVNDQGALFMFGQTK------RTGEANMYPKPV--HDLTGWNIKSVGT-SNTSIVIA 407
+++ ++ G ++ FG + T A + P+ + +L G + K+V + S V+A
Sbjct: 373 HTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLA 432
Query: 408 ADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCDN 463
D L+ WG + YG+LG+G+ N P +V ++D + +VA G+ HTLLL D+
Sbjct: 433 EDGQLLCWGWNK-YGQLGLGDTNDRNI-PTQV-QLDGCRLRKVACGWWHTLLLGDS 485
Score = 72.5 bits (170), Expect = 6e-13
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 163 GKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVG 222
G+ I + G H+ +TD G + G GQCG GNT Q+ + + V
Sbjct: 309 GQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVA 368
Query: 223 CGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSK 282
G ++ + +G +++FG ++GQLG TD H E +P+ +
Sbjct: 369 AGLWHTICISSDGKVYAFGGNQFGQLGTGTD------------HAEILPRLL-------- 408
Query: 283 DGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFD 342
DG K V SCG H+ + + WG+ +G+LG + D N+P ++ D
Sbjct: 409 DGQNLEGKHAKAV--SCGARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQVQ-LD 465
Query: 343 TVGRGVRSVHCGGTYSLAVND 363
G +R V CG ++L + D
Sbjct: 466 --GCRLRKVACGWWHTLLLGD 484
Score = 54.8 bits (126), Expect = 1e-07
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 184 CVYACGDNKSGQCGL--GNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNGNLHSFG 241
C+ + G K L G TT + +R G I + CG S + G L +FG
Sbjct: 278 CLESIGSGKERSFILHQGGTTTTSAQASREP--GQYIKAISCGGRHSAAITDAGGLITFG 335
Query: 242 MPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGN 301
YGQ GH T+ +L + ++ VK V + ++ G
Sbjct: 336 WGLYGQCGHGN------TNDQL------------------RPMAVSEVKSVRMESVAAGL 371
Query: 302 NHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAV 361
HT+ I S + +++G FG+LG E +PRL+ + G+ ++V CG +S +
Sbjct: 372 WHTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVL 431
Query: 362 NDQGALFMFGQTK 374
+ G L +G K
Sbjct: 432 AEDGQLLCWGWNK 444
Score = 40.3 bits (90), Expect = 0.003
Identities = 75/351 (21%), Positives = 134/351 (38%), Gaps = 48/351 (13%)
Query: 116 VSGCTAGHSVLVSEEGEAYTFGRNAC-GQLGFGDTVTRSVPELVPELKGKNIIHAAVGRH 174
V G G ++ +SE+G+ T+G GQ PE P ++ A+ G
Sbjct: 56 VCGGGCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFPLPTEAPVVQASSGWA 115
Query: 175 HTLFVTDTGCVYACGDNKS--GQCGLGNTTPQILKPTRIKYNGTPIVK-VGCGAEFSMIL 231
H VT+TG + G + + +G + I G+ E +
Sbjct: 116 HCAVVTETGEAFTWGWKECIPSKDPVGKQQSGSSEQGDIASQGSNAASGTTLQNENQKVG 175
Query: 232 DCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKD 291
+ + + GH + G +F T+ L + +IT + V+D
Sbjct: 176 EESVKRRRVSTAKDETEGHTSGGDFFATTPSLVS--VGLGVRITSVATGGRHTLALSVED 233
Query: 292 VTIVDLSCGNNHTVA-IDSMKRAFSWGFGGFGRLGHAEQ-KDENVPRLIKYFDTVGRG-- 347
S ++H + + + + WG+GG G+LG + K + P LI +++G G
Sbjct: 234 ------SFEDDHVFTEVSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKE 287
Query: 348 ------------------------VRSVHCGGTYSLAVNDQGALFMF--GQTKRTGEAN- 380
++++ CGG +S A+ D G L F G + G N
Sbjct: 288 RSFILHQGGTTTTSAQASREPGQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNT 347
Query: 381 ---MYPKPVHDLTGWNIKSVGTSN-TSIVIAADDSLIAWGVSPTYGELGMG 427
+ P V ++ ++SV +I I++D + A+G +G+LG G
Sbjct: 348 NDQLRPMAVSEVKSVRMESVAAGLWHTICISSDGKVYAFG-GNQFGQLGTG 397
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 78.6 bits (185), Expect = 8e-15
Identities = 95/379 (25%), Positives = 165/379 (43%), Gaps = 44/379 (11%)
Query: 116 VSGCTAGH--SVLVSEEGEAYTFGRNACGQLGF----GDTVTRSVPELVPELKGKNIIHA 169
+S +AGH S+ V+ GE + +GRN GQLG +RS P+ V L+ N+ A
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAA 143
Query: 170 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCGAEFS 228
+ + D G ++ G +K GQ GLGN + P+R++ +VKV G +
Sbjct: 144 FASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHA 203
Query: 229 MILDCNGNLHSFGMPEYGQLGH------------NTDGKYFVTSTKLSFHFETIPKQITL 276
+ L +G + +G G++G+ TDG + E K++
Sbjct: 204 LALTVDGKVFGWGYVADGRVGNVGLPLEASLLDSITDGSMKGHHAAGDLNLEAAEKKVVE 263
Query: 277 YIQKSKDGYIT--P--VKDV---TIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQ 329
+ K D I P V++ + D++CG++H++ + S G +G+LG ++Q
Sbjct: 264 AMSKENDMPIAWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQ 323
Query: 330 KDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGA--LFMFGQTKR----TGEANMYP 383
D +K D + S+ G +SLA+ ++G + +G + G+ P
Sbjct: 324 -DLG----MKPVDITESPI-SIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPENLP 377
Query: 384 KPVHDLTGWNIKSVGTSNT-SIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRM 442
+ V G + SV S+ + WG G LG+G S+ +P+ +
Sbjct: 378 REVEGFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKN-GRLGLG---SSSDEPEPMLLE 433
Query: 443 DSLG-ITQVAMGYSHTLLL 460
D G + Q G+ H+L+L
Sbjct: 434 DVEGCVLQAVAGFDHSLIL 452
Score = 48.8 bits (111), Expect = 8e-06
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGH----AEQKDENVPRLIKYFDTVGRGVR 349
I +S G+ H++A+ S ++WG G+LG + + + P+ ++ + V V+
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENV--NVQ 141
Query: 350 SVHCGGTYSLAVNDQGALFMFGQTKR--TGEAN-----MYPKPVHDLTGWNIKSVGTS-N 401
+ G S A+ D G+L+++G++KR G N P V +L ++ V
Sbjct: 142 AAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWG 201
Query: 402 TSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLC 461
++ + D + WG G +G + P E S +DS IT +M H
Sbjct: 202 HALALTVDGKVFGWGYVAD-GRVG------NVGLPLEASLLDS--ITDGSMKGHHA--AG 250
Query: 462 DNNIEEVKQKL 472
D N+E ++K+
Sbjct: 251 DLNLEAAEKKV 261
Score = 46.4 bits (105), Expect = 4e-05
Identities = 64/314 (20%), Positives = 127/314 (40%), Gaps = 42/314 (13%)
Query: 155 PELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG---LGNTTPQILKPTRI 211
P +V L +I + G +H+L VT +G ++A G N GQ G + ++ +P R+
Sbjct: 74 PTVVSNLPS-DISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRV 132
Query: 212 K-YNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETI 270
+ + S + +G+L +G + GQLG + ++ E +
Sbjct: 133 EGLENVNVQAAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNG----IIEARVPSRVENL 188
Query: 271 PKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQK 330
+ +V +S G H +A+ + F WG+ GR+G+
Sbjct: 189 AAE-------------------HVVKVSLGWGHALALTVDGKVFGWGYVADGRVGNV--- 226
Query: 331 DENVPRLIKYFDTVGRG-VRSVHCGGTYSLAVNDQGALFMFGQTKRTGEANMYPKPVHDL 389
+P D++ G ++ H G +L ++ + + A P V +
Sbjct: 227 --GLPLEASLLDSITDGSMKGHHAAGDLNLEAAEKKVVEAMSKENDMPIA-WEPCLVEET 283
Query: 390 TGWNIKSVGT-SNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMDSLGIT 448
+ + S+ S+++ D +L++ G S YG+LG + + KP +++
Sbjct: 284 CNEKVADIACGSDHSLILCHDGTLLSAG-SNIYGQLGRSKQDLG-MKPVDITESP----I 337
Query: 449 QVAMGYSHTLLLCD 462
+A G H+L +C+
Sbjct: 338 SIAAGLGHSLAICN 351
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 76.2 bits (179), Expect = 5e-14
Identities = 72/272 (26%), Positives = 117/272 (43%), Gaps = 53/272 (19%)
Query: 115 IVSGCTAG-HSVLVSEEGEAYTFGRNACGQLGFGDTVT-----RSVPELVPELKGK---- 164
IVS G H++ +S+ G+ + +G GQLG G V +P + P GK
Sbjct: 236 IVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSS 295
Query: 165 -----NIIHA-----------AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKP 208
+++ A G H+ +TDTG + G GQCG G+T + L P
Sbjct: 296 GVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDE-LSP 354
Query: 209 TRI-KYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHF 267
T + G I +V G + +G++++FG ++GQLG D
Sbjct: 355 TCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLGTGCD------------QA 402
Query: 268 ETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHA 327
ET+PK + +++V + +SCG HT I R F WG+ +G+LG
Sbjct: 403 ETLPKLLE----------APNLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIG 452
Query: 328 EQKDENVPRLIKYFDTVGRGVRSVHCGGTYSL 359
+ D N P ++ D +++ CG ++L
Sbjct: 453 DVIDRNAPAEVRIKDCF---PKNIACGWWHTL 481
Score = 65.7 bits (153), Expect = 6e-11
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV--PELKGKNIIHAAVGRHHTLFVT 180
H+ S +G+ Y FG N GQLG G ++P+L+ P L+ N+ + G HT +T
Sbjct: 374 HTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVIT 433
Query: 181 DTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMIL 231
D G V+ G NK GQ G+G+ + P ++ + CG +++L
Sbjct: 434 DEGRVFCWGWNKYGQLGIGDVIDR-NAPAEVRIKDCFPKNIACGWWHTLLL 483
Score = 62.9 bits (146), Expect = 5e-10
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 13/229 (5%)
Query: 153 SVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 212
++P LV G I+ A G HTL ++D G V+ G GQ GLG+ + P I
Sbjct: 223 ALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIP 282
Query: 213 -YNGTPIVK-VGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETI 270
+ K G S ++ C L S+ + G T L+F +
Sbjct: 283 CIEPSSYGKATSSGVNMSSVVQCGRVLGSY--VKKIACGGRHSAVITDTGALLTFGWGLY 340
Query: 271 PKQITLYIQKSKDGYITP-----VKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLG 325
+ Q S D ++P + + I +++ G HT S +++G FG+LG
Sbjct: 341 GQ----CGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLG 396
Query: 326 HAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK 374
+ E +P+L++ + V+++ CG ++ + D+G +F +G K
Sbjct: 397 TGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVFCWGWNK 445
Score = 62.5 bits (145), Expect = 6e-10
Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 17/257 (6%)
Query: 215 GTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLS-FHFETIPKQ 273
G IV V G ++ L G + +G GQLG + + + + + K
Sbjct: 233 GVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKA 292
Query: 274 ITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDEN 333
+ + S V + ++CG H+ I ++G+G +G+ G DE
Sbjct: 293 TSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDEL 352
Query: 334 VPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTK----RTG--EANMYPKPVH 387
P + +G + V G ++ + G ++ FG + TG +A PK +
Sbjct: 353 SPTCVS--SLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLE 410
Query: 388 --DLTGWNIKSV--GTSNTSIVIAADDSLIAWGVSPTYGELGMGEINKSTAKPKEVSRMD 443
+L N+K++ G +T+ VI + + WG + YG+LG+G++ A P EV R+
Sbjct: 411 APNLENVNVKTISCGARHTA-VITDEGRVFCWGWN-KYGQLGIGDVIDRNA-PAEV-RIK 466
Query: 444 SLGITQVAMGYSHTLLL 460
+A G+ HTLLL
Sbjct: 467 DCFPKNIACGWWHTLLL 483
Score = 58.0 bits (134), Expect = 1e-08
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 292 VTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLG-----------------------HAE 328
V IV ++ G HT+A+ + + + WG+GG G+LG A
Sbjct: 234 VRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKAT 293
Query: 329 QKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQ------TKRTGEANMY 382
N+ +++ +G V+ + CGG +S + D GAL FG + + + +
Sbjct: 294 SSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDELS 353
Query: 383 PKPVHDLTGWNIKSVGTSNTSIVIAADD-SLIAWGVSPTYGELGMGEINKSTAKPK--EV 439
P V L G I+ V A+ D + A+G +G+LG G +++ PK E
Sbjct: 354 PTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFG-GNQFGQLGTG-CDQAETLPKLLEA 411
Query: 440 SRMDSLGITQVAMGYSHTLLLCD 462
++++ + ++ G HT ++ D
Sbjct: 412 PNLENVNVKTISCGARHTAVITD 434
Score = 43.6 bits (98), Expect = 3e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 119 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 178
C A H+ ++++EG + +G N GQLG GD + R+ P V +K + A G HTL
Sbjct: 424 CGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNAPAEV-RIKDCFPKNIACGWWHTLL 482
Query: 179 V 179
+
Sbjct: 483 L 483
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 69.3 bits (162), Expect = 5e-12
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 182
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 256 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 314
Query: 183 GCVYACGDNKSGQCGLG-NTTPQILKPTRIKY-NGTPIVKVGCGAEFSMILDCNGNLHSF 240
G V+ G NK GQ G G + + P + Y G + +++L +G ++++
Sbjct: 315 GEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 374
Query: 241 G 241
G
Sbjct: 375 G 375
Score = 65.3 bits (152), Expect = 8e-11
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 175
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 197 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 256
Query: 176 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG 235
T+ T+ G VY G N+ GQ G + Q P ++ IV V + + ++ G
Sbjct: 257 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAVSAANKHTAVVSDCG 315
Query: 236 NLHSFGMPEYGQLGHNT 252
+ ++G + GQLG+ T
Sbjct: 316 EVFTWGCNKEGQLGYGT 332
Score = 56.0 bits (129), Expect = 5e-08
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 36/249 (14%)
Query: 132 EAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDN 191
E +++G A QLG G+ + VP V L G I + + H++ ++ G VY G
Sbjct: 154 EVFSWGNGANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFG 213
Query: 192 KSGQCG-----LGNTTPQILKPTR-IKYNGTPIVK-VGCGAEFSMILDCNGNLHSFGMPE 244
+ G+ G + + ++ P + I G+ VK V ++I G+++++G
Sbjct: 214 RGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWGSNR 273
Query: 245 YGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHT 304
GQLG+ S + P+++T K+K IV +S N HT
Sbjct: 274 EGQLGYT------------SVDTQATPRKVTSL--KAK-----------IVAVSAANKHT 308
Query: 305 VAIDSMKRAFSWGFGGFGRLGHAEQKDEN--VPRLIKYFDTVGRGVRSVHCGGTYSLAVN 362
+ F+WG G+LG+ + PRL+ Y G+ ++ ++L +
Sbjct: 309 AVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLK--GKVFTAIASSKYHTLVLR 366
Query: 363 DQGALFMFG 371
+ G ++ +G
Sbjct: 367 NDGEVYTWG 375
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 103 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 160
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 287 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 346
Query: 161 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 189
LKGK A ++HTL + + G VY G
Sbjct: 347 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 375
Score = 52.0 bits (119), Expect = 8e-07
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAE------QKDENVPRLIKYFDTVGRGVRS 350
+S H+VAI + ++WGFG GRLGH E Q PR + R V++
Sbjct: 191 VSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQV-ISGLGSRRVKA 249
Query: 351 VHCGGTYSLAVNDQGALFMFGQTKR------TGEANMYPKPVHDLTGWNIKSVGTSNTSI 404
V +++ + G ++ +G + + + P+ V L I +V +N
Sbjct: 250 VAAAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKA-KIVAVSAANKHT 308
Query: 405 VIAAD-DSLIAWGVSPTYGELGMGEINK-STAKPKEVSRMDSLGITQVAMGYSHTLLL 460
+ +D + WG + G+LG G N S P+ V + T +A HTL+L
Sbjct: 309 AVVSDCGEVFTWGCNKE-GQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVL 365
Score = 37.5 bits (83), Expect = 0.019
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 314 FSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFM--FG 371
FSWG G +LG Q + VP + G ++ V +S+A++ G ++ FG
Sbjct: 156 FSWGNGANYQLGTGNQHVQKVPGRVDSLH--GCFIKLVSAAKFHSVAISTHGEVYTWGFG 213
Query: 372 QTKRTGE----------ANMYPKPV-HDLTGWNIKSVGTSNTSIVIAAD-DSLIAWGVSP 419
+ R G A + P+ V L +K+V + VIA + + WG S
Sbjct: 214 RGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWG-SN 272
Query: 420 TYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
G+LG ++ + A P++V+ + + I V+ HT ++ D
Sbjct: 273 REGQLGYTSVD-TQATPRKVTSLKA-KIVAVSAANKHTAVVSD 313
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 69.3 bits (162), Expect = 5e-12
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 182
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 253 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 311
Query: 183 GCVYACGDNKSGQCGLG-NTTPQILKPTRIKY-NGTPIVKVGCGAEFSMILDCNGNLHSF 240
G V+ G NK GQ G G + + P + Y G + +++L +G ++++
Sbjct: 312 GEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 371
Query: 241 G 241
G
Sbjct: 372 G 372
Score = 65.3 bits (152), Expect = 8e-11
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 123 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 175
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 194 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 253
Query: 176 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG 235
T+ T+ G VY G N+ GQ G + Q P ++ IV V + + ++ G
Sbjct: 254 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAVSAANKHTAVVSDCG 312
Query: 236 NLHSFGMPEYGQLGHNT 252
+ ++G + GQLG+ T
Sbjct: 313 EVFTWGCNKEGQLGYGT 329
Score = 57.2 bits (132), Expect = 2e-08
Identities = 62/266 (23%), Positives = 114/266 (42%), Gaps = 37/266 (13%)
Query: 115 IVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRH 174
+VSG A + + E +++G A QLG G+ + VP V L G I + +
Sbjct: 135 LVSGPVA-QVIGEQQSSEVFSWGNGANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKF 193
Query: 175 HTLFVTDTGCVYACGDNKSGQCG-----LGNTTPQILKPTR-IKYNGTPIVK-VGCGAEF 227
H++ ++ G VY G + G+ G + + ++ P + I G+ VK V
Sbjct: 194 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 253
Query: 228 SMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYIT 287
++I G+++++G GQLG+ S + P+++T K+K
Sbjct: 254 TVIATEGGDVYTWGSNREGQLGYT------------SVDTQATPRKVTSL--KAK----- 294
Query: 288 PVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDEN--VPRLIKYFDTVG 345
IV +S N HT + F+WG G+LG+ + PRL+ Y G
Sbjct: 295 ------IVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLK--G 346
Query: 346 RGVRSVHCGGTYSLAVNDQGALFMFG 371
+ ++ ++L + + G ++ +G
Sbjct: 347 KVFTAIASSKYHTLVLRNDGEVYTWG 372
Score = 56.0 bits (129), Expect = 5e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 103 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 160
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 284 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 343
Query: 161 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 189
LKGK A ++HTL + + G VY G
Sbjct: 344 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 372
Score = 52.0 bits (119), Expect = 8e-07
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 297 LSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAE------QKDENVPRLIKYFDTVGRGVRS 350
+S H+VAI + ++WGFG GRLGH E Q PR + R V++
Sbjct: 188 VSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQV-ISGLGSRRVKA 246
Query: 351 VHCGGTYSLAVNDQGALFMFGQTKR------TGEANMYPKPVHDLTGWNIKSVGTSNTSI 404
V +++ + G ++ +G + + + P+ V L I +V +N
Sbjct: 247 VAAAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKA-KIVAVSAANKHT 305
Query: 405 VIAAD-DSLIAWGVSPTYGELGMGEINK-STAKPKEVSRMDSLGITQVAMGYSHTLLL 460
+ +D + WG + G+LG G N S P+ V + T +A HTL+L
Sbjct: 306 AVVSDCGEVFTWGCNKE-GQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVL 362
Score = 40.7 bits (91), Expect = 0.002
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 21/225 (9%)
Query: 253 DGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGN-NHTVAIDSMK 311
DG+ +S + HF + L I + +K T VDL G +
Sbjct: 92 DGESGWSSLHRALHFGHLAVASVL-IDSGASFTLEDIKLRTPVDLVSGPVAQVIGEQQSS 150
Query: 312 RAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFM-- 369
FSWG G +LG Q + VP + G ++ V +S+A++ G ++
Sbjct: 151 EVFSWGNGANYQLGTGNQHVQKVPGRVDSLH--GCFIKLVSAAKFHSVAISTHGEVYTWG 208
Query: 370 FGQTKRTGE----------ANMYPKPV-HDLTGWNIKSVGTSNTSIVIAAD-DSLIAWGV 417
FG+ R G A + P+ V L +K+V + VIA + + WG
Sbjct: 209 FGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWG- 267
Query: 418 SPTYGELGMGEINKSTAKPKEVSRMDSLGITQVAMGYSHTLLLCD 462
S G+LG ++ + A P++V+ + + I V+ HT ++ D
Sbjct: 268 SNREGQLGYTSVD-TQATPRKVTSLKA-KIVAVSAANKHTAVVSD 310
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 64.9 bits (151), Expect = 1e-10
Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 46/298 (15%)
Query: 111 RYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-------KG 163
R R++ A HS+ VS++G + +G N GQLGF D P L+ L
Sbjct: 72 RIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGF-DGENSLAPCLIKNLFERETSSSS 130
Query: 164 KNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLGNTTPQILKP-TRIKYNGTPI--- 218
N VG + G + + DN G GN PQ +P R+ + PI
Sbjct: 131 LNDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFP 190
Query: 219 ---------VKVGCGAEFSMILDCNGNLH---SFGMPEYGQLGHNTDGKYFVTSTKLSFH 266
+KV CG E + L G++H S+ + G+N G+ + +
Sbjct: 191 ILDFHGRTVLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGE---- 246
Query: 267 FETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKR-------AFSWGFG 319
P+ + + QKS +T+ D++CG +HT + K +++GFG
Sbjct: 247 SRARPQTVETFNQKS---------GLTVYDIACGAHHTALLTYRKETPKGPSICWTFGFG 297
Query: 320 GFGRLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQGALFMFGQTKRTG 377
G+LGH K ++P + V SV CG ++ V+ +G ++ +G + G
Sbjct: 298 ENGQLGHRSNKSSSLPEPVSDLPEHAYLV-SVDCGLFHTSVVSSEGYVWSWGMERGLG 354
Score = 60.1 bits (139), Expect = 3e-09
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 13/215 (6%)
Query: 157 LVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILK-----PTRI 211
L+ E + II A G HT+ +T GCVY+ G G+ G G + +++ P +
Sbjct: 9 LISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQA 68
Query: 212 KYNGTPIVKVGCGAEFSMILDCNGNLHSFGMPEYGQLGHNTDGKYFVTSTKLSFHFETIP 271
+ + IV V GA S+ + +G++ +G YGQLG + + K F ET
Sbjct: 69 EGDRIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGFDGENSLAPCLIKNLFERETSS 128
Query: 272 KQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWG-FGGFGRLGHAEQK 330
+ D D+ + + G+ ++AID++ + WG
Sbjct: 129 SSL-------NDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLS 181
Query: 331 DENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQG 365
++P D GR V V CG + +A+ G
Sbjct: 182 FTSIPIPFPILDFHGRTVLKVACGDEHVVALVGPG 216
Score = 59.7 bits (138), Expect = 4e-09
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 294 IVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENVPRLIKYFDTV-GRGVR--S 350
I+ L+ G HT+A+ +SWG G FGRLG ++ DE VP L+++ + G +R
Sbjct: 18 IISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDRIRIVG 77
Query: 351 VHCGGTYSLAVNDQGALF-----MFGQTKRTGEANMYPKPVHDLTGWNIKSVGTSNTSIV 405
V G +SLAV+D G+++ ++GQ GE ++ P + +L S +++
Sbjct: 78 VAAGAYHSLAVSDDGSVWCWGYNIYGQLGFDGENSLAPCLIKNLFERETSSSSLNDSGRE 137
Query: 406 IAAD 409
+ +D
Sbjct: 138 VGSD 141
Score = 58.8 bits (136), Expect = 7e-09
Identities = 93/394 (23%), Positives = 170/394 (43%), Gaps = 46/394 (11%)
Query: 109 DRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP---ELKGK- 164
D ++I H++ ++ +G Y++GR G+LG G VP LV + +G
Sbjct: 13 DLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDR 72
Query: 165 -NIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGL---GNTTPQILKPTRIKYNGTPIVK 220
I+ A G +H+L V+D G V+ G N GQ G + P ++K + + +
Sbjct: 73 IRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGFDGENSLAPCLIKNLFERETSSSSLN 132
Query: 221 VG---CGAEFSMILDCNGNLHSFGMPEYGQL--GHNTDGKYFVTSTKLSFHFETIPKQIT 275
G++ + G++ S + G L N + +LSF IP I
Sbjct: 133 DSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPIL 192
Query: 276 LY----IQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKD 331
+ + K G V V D+ N++ V++ +SWG G+LG + +
Sbjct: 193 DFHGRTVLKVACGDEHVVALVGPGDIHKDNSYDVSV-----LYSWGNNHHGQLGLGDGES 247
Query: 332 ENVPRLIKYFD-TVGRGVRSVHCGGTYSLAV-----NDQGA----LFMFGQT----KRTG 377
P+ ++ F+ G V + CG ++ + +G F FG+ R+
Sbjct: 248 RARPQTVETFNQKSGLTVYDIACGAHHTALLTYRKETPKGPSICWTFGFGENGQLGHRSN 307
Query: 378 EANMYPKPVHDLTGW-NIKSV--GTSNTSIVIAADDSLIAWGVSPTYG---ELGMGEINK 431
+++ P+PV DL + SV G +TS V++++ + +WG+ G ++ E+
Sbjct: 308 KSSSLPEPVSDLPEHAYLVSVDCGLFHTS-VVSSEGYVWSWGMERGLGLCPDVNFTEVEA 366
Query: 432 -STAKPKEVSRMDS--LGITQVAMGYSHTLLLCD 462
+ P+++S S QV+ G +HT+L+ D
Sbjct: 367 GDDSVPRKISGGSSRFRDPVQVSCGAAHTVLVVD 400
Score = 46.4 bits (105), Expect = 4e-05
Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 53/269 (19%)
Query: 154 VPELVPELKGKNIIHAAVGRHHTLFVT-----------DTGCVYACGDNKSGQCGLGNTT 202
+P + + G+ ++ A G H + + D +Y+ G+N GQ GLG+
Sbjct: 187 IPFPILDFHGRTVLKVACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGE 246
Query: 203 PQILKPTRIKYN---GTPIVKVGCGAEFSMILDCNGNLH-------SFGMPEYGQLGHNT 252
+ T +N G + + CGA + +L +FG E GQLGH +
Sbjct: 247 SRARPQTVETFNQKSGLTVYDIACGAHHTALLTYRKETPKGPSICWTFGFGENGQLGHRS 306
Query: 253 DGKYFVTSTKLSFHFETIPKQITLYIQKSKDGYITPVKDVTIVDLSCGNNHTVAIDSMKR 312
+ S+ L +P+ L V + CG HT + S
Sbjct: 307 N-----KSSSLPEPVSDLPEHAYL------------------VSVDCGLFHTSVVSSEGY 343
Query: 313 AFSWGFG-GFG-----RLGHAEQKDENVPRLIKYFDTVGRGVRSVHCGGTYSLAVNDQG- 365
+SWG G G E D++VPR I + R V CG +++ V D G
Sbjct: 344 VWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSSRFRDPVQVSCGAAHTVLVVDGGY 403
Query: 366 ALFMFGQTKR--TGEANMYPKPVHDLTGW 392
L+ +G+ + G N+ V L W
Sbjct: 404 KLWSWGRGRNGVLGTGNVSDCYVPTLVFW 432
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 55 ECTTKLPEELLKTFYKTPGVL 75
+C TKL E LLK+FYKT ++
Sbjct: 242 DCDTKLDEYLLKSFYKTASLV 262
>At2g06050.2 68415.m00664 12-oxophytodienoate reductase (OPR3) /
delayed dehiscence1 (DDE1) nearly identical to DELAYED
DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314];
contains Pfam profile PF00724:oxidoreductase,
FAD/FMN-binding; identical to cDNA OPDA-reductase
homolog GI:5059114
Length = 391
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 186 YACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSM--ILDCNGNLHSFG 241
+A G +SG+ G +++K R+ YNGT + G E M + + +L S+G
Sbjct: 286 HAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYG 343
>At2g06050.1 68415.m00663 12-oxophytodienoate reductase (OPR3) /
delayed dehiscence1 (DDE1) nearly identical to DELAYED
DEHISCENCE1 [GI:7688991] and to OPR3 [GI:10242314];
contains Pfam profile PF00724:oxidoreductase,
FAD/FMN-binding; identical to cDNA OPDA-reductase
homolog GI:5059114
Length = 391
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 186 YACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSM--ILDCNGNLHSFG 241
+A G +SG+ G +++K R+ YNGT + G E M + + +L S+G
Sbjct: 286 HAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYG 343
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 28.7 bits (61), Expect = 9.0
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 177 LFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCGAEFSMILDCNG- 235
LFVT T C YA D S + L + R+ +N T + C + + +G
Sbjct: 31 LFVTTTFCSYAIADLNSDRQALLAFAASVPHLRRLNWNSTNHI---CKSWVGVTCTSDGT 87
Query: 236 NLHSFGMPEYGQLG---HNTDGK 255
++H+ +P G LG NT GK
Sbjct: 88 SVHALRLPGIGLLGPIPPNTLGK 110
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 28.7 bits (61), Expect = 9.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 296 DLSCGNNHTVAI--DSMKRAFSWGFGGFGRLGHAEQKDENVPRLIK 339
DLS G H+ + D+ KR WGFG R E+K+ P + K
Sbjct: 167 DLSSGRRHSDSRVEDNEKRGSRWGFG--DRHSRVERKEHEDPEISK 210
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 28.7 bits (61), Expect = 9.0
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 281 SKDGYITPVKDVTIVDLSCGNNHTVAIDSMKRAFSWGFGGFGRLGHAEQKDENV------ 334
S +GY+ VKDV +DL GN T + + F G G+LG ++ + +
Sbjct: 175 STNGYL--VKDVVHLDLVTGNRQTGSTNG-TIIFGCGSKQSGQLGESQAAVDGIMGFGQS 231
Query: 335 -PRLIKYFDTVGRGVRS-VHCGGTYSLAVNDQGALFMFGQ--TKRTGEANMYPKPVHDLT 390
I + G+ RS HC L N+ G +F G+ + + M K H
Sbjct: 232 NSSFISQLASQGKVKRSFAHC-----LDNNNGGGIFAIGEVVSPKVKTTPMLSKSAHYSV 286
Query: 391 GWNIKSVGTSNTSIVIAADDS 411
N VG S + A DS
Sbjct: 287 NLNAIEVGNSVLELSSNAFDS 307
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,643
Number of Sequences: 28952
Number of extensions: 553731
Number of successful extensions: 1704
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 272
length of query: 480
length of database: 12,070,560
effective HSP length: 84
effective length of query: 396
effective length of database: 9,638,592
effective search space: 3816882432
effective search space used: 3816882432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -