Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002103-TA|BGIBMGA002103-PA|IPR000217|Tubulin,
IPR002452|Alpha tubulin, IPR003008|Tubulin/FtsZ, GTPase,
IPR008280|Tubulin/FtsZ, C-terminal
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 725 0.0
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 723 0.0
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 345 8e-96
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 239 7e-64
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 31 0.44
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 2.3
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 5.4
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 27 7.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 725 bits (1792), Expect = 0.0
Identities = 323/439 (73%), Positives = 376/439 (85%)
Query: 1 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 60
MRE ISIH GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 61 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
+VPR++++DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 121 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 180
++R++AD C+GLQGFL+ LL+ERL+++Y KKSKL+F++YPAPQ+ST+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 181 VVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
VVEPYNS+LTTH TL+ +D FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240
Query: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 300
SLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP N
Sbjct: 241 SLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYN 300
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPP 360
QMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP
Sbjct: 301 QMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPP 360
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
+ G ++AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 QHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDYEEVGMDS 439
AREDLAALE+DYEEVG DS
Sbjct: 421 AREDLAALERDYEEVGQDS 439
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 723 bits (1788), Expect = 0.0
Identities = 323/443 (72%), Positives = 378/443 (85%), Gaps = 4/443 (0%)
Query: 1 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DSFNTFFSET 56
MRE IS+H GQAGVQIGNACWELYCLEHGI PDG + V + D F TFFSET
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 57 GAGKHVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 116
G GK VPR++++DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 117 LVLDRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 176
VL+R+R++AD C+GLQGFL+ LL+ERL+++YGKKS L+F++YPAPQ
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 177 ISTAVVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 236
+ST+VVEPYNS+LTTH TL++SD FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VS
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVS 240
Query: 237 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACF 296
SITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CF
Sbjct: 241 SITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCF 300
Query: 297 EPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGIN 356
EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI
Sbjct: 301 EPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGIC 360
Query: 357 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEG 416
Y+PP VPG +AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEG
Sbjct: 361 YEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEG 420
Query: 417 EFSEAREDLAALEKDYEEVGMDS 439
EFSEAREDLAALE+DYEEVG DS
Sbjct: 421 EFSEAREDLAALERDYEEVGQDS 443
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 345 bits (848), Expect = 8e-96
Identities = 170/441 (38%), Positives = 254/441 (57%), Gaps = 13/441 (2%)
Query: 1 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 60
MRE + I AGQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 61 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
+VPRAV +DLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 121 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 180
VR+ A+ C LQGF + LL+ ++ +Y + F++ PAP+ S
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178
Query: 181 VVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238
Query: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 300
S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPP 360
MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 K-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AR---EDLAALEKDYEEVGMD 438
A DL + + Y+E G+D
Sbjct: 411 AESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 239 bits (584), Expect = 7e-64
Identities = 138/442 (31%), Positives = 235/442 (53%), Gaps = 18/442 (4%)
Query: 2 RECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 61
RE I++ AGQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGV--DRKDVFFYQSDDTRY 60
Query: 62 VPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVL 119
+PRA+ IDLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 120 DRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-IS 178
D + + AD L+GF + L+ERL+ Y KK ++++P Q +S
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179
Query: 179 TAVVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
VV+PYNS+L ++D+ ++DN A+ I L + PT+ N+L+ ++S+
Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSAS 239
Query: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNAC 295
T +LR+ G +N DL +L+P PR HF L +Y P + E + +V ++
Sbjct: 240 TTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRL 299
Query: 296 FEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVG 354
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V
Sbjct: 300 LLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVA 359
Query: 355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGME 414
++ + P + ++ + ML+N T+IA + R ++D + + AF+ Y E +
Sbjct: 360 LSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIF 414
Query: 415 E---GEFSEAREDLAALEKDYE 433
E EF +R+ +A L +YE
Sbjct: 415 EDDLNEFDSSRDVVADLINEYE 436
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 161 YGKKSKLEFAIYPAPQISTAVVE-PYNSILTTHTTLEHSDAAFMVDN 206
Y + K+E YP +I V + PYN +L ++LE ++DN
Sbjct: 110 YNSRWKIEIPSYPVREIPYVVADTPYNKLLCPLSSLEWVSKLILMDN 156
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 291 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 311 KYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 370
++ + Y + KDVN +G TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 371 VQR 373
VQR
Sbjct: 200 VQR 202
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 7.1
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 218 DIERPTYTNLNRLIGQIVSSITAS---LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 274
DI+ + T+ + ++ SS++ + L+FD L +L FQ N P + Y
Sbjct: 151 DIDNFSKTSAEEIASKLFSSVSPTHETLQFDHGLQ-NLEGFQANEHPEMFADHSIDFYNS 209
Query: 275 V---ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGK 311
I A Q S + N EPA++ VK P+ GK
Sbjct: 210 NNVDIPALSMLTSQTSSSSTLNLPPEPASREVKIFPKQGK 249
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,286
Number of Sequences: 5004
Number of extensions: 79997
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 9
length of query: 450
length of database: 2,362,478
effective HSP length: 75
effective length of query: 375
effective length of database: 1,987,178
effective search space: 745191750
effective search space used: 745191750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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