GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002102-TA|BGIBMGA002102-PA|undefined
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1527 - 38006174-38006815,38006920-38007420                       30   1.7  
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    29   3.0  
11_01_0771 + 6453130-6454488                                           28   7.0  
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    28   7.0  
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878     28   7.0  
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    27   9.2  

>01_06_1527 - 38006174-38006815,38006920-38007420
          Length = 380

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 164 YSTLLIICTTTYEAEGDGSARAARPTIPSRYSRDLIYEYIDWSRTPAQHS 213
           Y+ +L   TT Y   G G    +    P+R   D+  E + W  T A  S
Sbjct: 49  YTNILFPSTTVYRYRGGGGGSFSEFVAPTRLMHDMTDEQLFWRATMAPAS 98


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 148 GRKEHPIDIVGLALRLYSTLLIICTTTYEAEGDGSARAARPTIPSRYSRDLIYEYIDWSR 207
           G   H I  V  A+ + + L+ ICT             ARPTI     + L YE + +++
Sbjct: 353 GHVFHGIPSVS-AVEVLNLLVDICTKQSVWSSQVHTLTARPTIMFMNLKHLTYEILIFTK 411

Query: 208 TPAQHSRLVDV 218
            P  HS ++ +
Sbjct: 412 DPNSHSGVLQL 422


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 4   RSPLYIVDGGAAMRAVRTVPYLIPGTRTYLGRRIVVN 40
           R P Y  DG AA  AV  VPY+   +R+Y  +R+ V+
Sbjct: 227 RKPFYRHDGAAAAAAVADVPYM--SSRSY--QRVAVH 259


>07_01_0552 +
           4109906-4109983,4110422-4110484,4110496-4110525,
           4110567-4110621,4111046-4111143,4112259-4112417,
           4112518-4112577,4113436-4113624,4113749-4113802,
           4113959-4114045,4114149-4114881,4115282-4115373,
           4115739-4115812,4116097-4116199,4116342-4117204,
           4117649-4117724,4117861-4117972,4118092-4118168,
           4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 202 YIDWSRTPAQHSRLVDVLAVI 222
           ++D SR PAQHS  VD L+ +
Sbjct: 16  FVDVSRPPAQHSASVDALSAL 36


>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
          Length = 474

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 159 LALRLYSTLLIICTTTYEAEGDGSARAARPTIPSRYSRDLIYEYIDWSRTPAQHSRLVDV 218
           +AL   +  +++  T +  +G      A P     Y+ +LI   ++ S TPA+    +DV
Sbjct: 248 MALNFKTLKIMVTETGWPNKGAAKETGATPDNAQTYNTNLIRHVVNDSGTPAKPGEEIDV 307


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 18  AVRTVPYLIPGTRT--YLGRRIVVNIARTRRGE 48
           ++R  PY +PG RT  ++G ++++ +A T   E
Sbjct: 509 SLRASPYAVPGLRTSGFMGSQVILPLAHTLEHE 541


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,803,296
Number of Sequences: 37544
Number of extensions: 204719
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 6
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)