GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002102-TA|BGIBMGA002102-PA|undefined
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2)                       28   5.4  
SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   7.1  
SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.1  

>SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2)
          Length = 185

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)

Query: 175 YEAEGDGSARAARPTIPSRY 194
           YE EGDG  R   P  P RY
Sbjct: 17  YEGEGDGKDRKKHPGFPKRY 36


>SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)

Query: 175 YEAEGDGSARAARPTIPSRY 194
           YE EGDG  R   P  P RY
Sbjct: 17  YEGEGDGKDRKKHPGFPKRY 36


>SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)

Query: 175 YEAEGDGSARAARPTIPSRY 194
           YE EGDG  R   P  P RY
Sbjct: 17  YEGEGDGKDRKKHPGFPKRY 36


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 137 AGIRAHQRPYFGRKEHPIDIVGLALRLYSTLLIICTTTYEAEGDGSARAARPTI 190
           + ++AH   + G++ H  D+ G    L STL      T+ A    +    RP+I
Sbjct: 594 SNLQAHIFGHTGQRPHKCDVCGKGFTLASTLNTHKERTFLANHSSALTVTRPSI 647


>SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 322

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 133 CTVDAGIRAHQRPYFGRKEHPIDIVGLALRLYS 165
           CT+   ++ HQR + G+K H  D  G  L ++S
Sbjct: 87  CTLHTHLKTHQRIHSGQKLHKCDECGKHLIIHS 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,458,521
Number of Sequences: 59808
Number of extensions: 220725
Number of successful extensions: 393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)