GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002102-TA|BGIBMGA002102-PA|undefined
         (222 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09064-1|CAA70285.1|  509|Drosophila melanogaster succinate dehy...    29   6.8  
AY051472-1|AAK92896.1|  661|Drosophila melanogaster GH13919p pro...    28   8.9  
AE013599-2872|AAN16127.1|  661|Drosophila melanogaster CG17246-P...    28   8.9  
AE013599-2871|AAM70849.1|  661|Drosophila melanogaster CG17246-P...    28   8.9  
AE013599-2870|AAG22257.1|  661|Drosophila melanogaster CG17246-P...    28   8.9  

>Y09064-1|CAA70285.1|  509|Drosophila melanogaster succinate
           dehydrogenase flavoproteinsubunit protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 159 LALRLYSTLLIICTTTYEAEGDGSARAARPTIPSR 193
           LA   Y      CT+ +   GDG+A  AR  +PS+
Sbjct: 233 LATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQ 267


>AY051472-1|AAK92896.1|  661|Drosophila melanogaster GH13919p
           protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 164 YSTLLIICTTTYEAEGDGSARAARPTIPSR 193
           Y      CT+ +   GDG+A  AR  +PS+
Sbjct: 256 YGRAFFSCTSAHTCTGDGTAMVARQGLPSQ 285


>AE013599-2872|AAN16127.1|  661|Drosophila melanogaster CG17246-PC,
           isoform C protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 164 YSTLLIICTTTYEAEGDGSARAARPTIPSR 193
           Y      CT+ +   GDG+A  AR  +PS+
Sbjct: 256 YGRAFFSCTSAHTCTGDGTAMVARQGLPSQ 285


>AE013599-2871|AAM70849.1|  661|Drosophila melanogaster CG17246-PB,
           isoform B protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 164 YSTLLIICTTTYEAEGDGSARAARPTIPSR 193
           Y      CT+ +   GDG+A  AR  +PS+
Sbjct: 256 YGRAFFSCTSAHTCTGDGTAMVARQGLPSQ 285


>AE013599-2870|AAG22257.1|  661|Drosophila melanogaster CG17246-PA,
           isoform A protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 164 YSTLLIICTTTYEAEGDGSARAARPTIPSR 193
           Y      CT+ +   GDG+A  AR  +PS+
Sbjct: 256 YGRAFFSCTSAHTCTGDGTAMVARQGLPSQ 285


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,871
Number of Sequences: 52641
Number of extensions: 310936
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 24,830,863
effective HSP length: 82
effective length of query: 140
effective length of database: 20,514,301
effective search space: 2872002140
effective search space used: 2872002140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)