GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002102-TA|BGIBMGA002102-PA|undefined
         (222 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18420.1 68417.m02733 hypothetical protein                          27   7.7  

>At4g18420.1 68417.m02733 hypothetical protein 
          Length = 154

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 30 RTYLGRRIVVNIARTRRGECMRYIECGI 57
          R + G  +VV I+++    C RY  CG+
Sbjct: 26 RCWCGEAVVVLISKSDSNPCRRYYRCGL 53


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,853
Number of Sequences: 28952
Number of extensions: 141860
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 1
length of query: 222
length of database: 12,070,560
effective HSP length: 78
effective length of query: 144
effective length of database: 9,812,304
effective search space: 1412971776
effective search space used: 1412971776
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)