GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002101-TA|BGIBMGA002101-PA|undefined
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.5  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    25   3.5  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   4.6  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   6.1  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    24   8.0  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    24   8.0  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 3    LSTEDIEKWTRDGRNKELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEM 58
            L  E+I  W  +   K LE+ P C     +    P +  L+   +    DY++  M
Sbjct: 1096 LFLENITNWCSESGIKSLELLPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYIKYAM 1151


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18  KELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQ 55
           KEL +S S S  ++LD  DP++ R+    F++ T  ++
Sbjct: 342 KELAISIS-SKMQMLDRRDPILLRVFRSDFQRVTHIVE 378


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 50  TTDYLQAEMVAGQEH 64
           T DYL  EMV G+EH
Sbjct: 248 TLDYLPPEMVEGKEH 262


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 31  VLDPHDPVISRLATQLFKKTTDYLQAE 57
           ++ P+DP I  L+ +L KK+ D+ + E
Sbjct: 164 LVHPNDPAILALSKELQKKSDDFEKRE 190


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 27  SSFEVLDPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYAD 81
           S   ++DPH  V      +  +KT D     +     H    ++   LA++ Y+D
Sbjct: 414 SDHYIIDPHTAVGVETGLRCLEKTKDQDITYICLSTAHPAKFDKAVNLALSSYSD 468


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 65  YMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYA 101
           + L+ + +  AIT    +  + A+ N TL E+N++Y+
Sbjct: 423 FELINQTDGDAITNLLLVEVILAHKNCTLKEWNQLYS 459


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,816
Number of Sequences: 5004
Number of extensions: 17752
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)