Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002101-TA|BGIBMGA002101-PA|undefined
(145 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0678 - 5045565-5045834,5046900-5046995 32 0.21
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 31 0.48
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 1.5
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 27 4.5
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 27 4.5
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 27 4.5
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553... 27 5.9
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342... 27 7.8
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 27 7.8
>02_01_0678 - 5045565-5045834,5046900-5046995
Length = 121
Score = 31.9 bits (69), Expect = 0.21
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 36 DPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNE 95
D + LA +LF + ++ E+ LLE++NR +Y + +A+ L + +
Sbjct: 10 DELADSLA-ELFTNVSLMVRGELQGTNSQLSLLEKMNRRVAEEYNNYGDVASGLRVFVEQ 68
Query: 96 YNEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFK 140
NE + QV++FE LD + L+ + K
Sbjct: 69 LNEKNQSFGEYVSQIDAIDQ-QVTEFEAVVSMLDKHVSLLEKKVK 112
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 30.7 bits (66), Expect = 0.48
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 16 RNKELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQA--EMVAGQEHYMLLEEINR 73
R++E+E S +C + E P+ P + + F T L + E G+E+++ +E
Sbjct: 615 RDREVESSATCMNNE---PNQPSPTSVLEACFSNDTSSLGSPTEKNEGKEYFVSIENKME 671
Query: 74 LAITKYADLRSLAANLNKTLNEYNEMY 100
+D+ LA +++KT + E++
Sbjct: 672 DLFNLESDIVDLAISIDKTKTDAEEIF 698
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 7 DIEKWTRDGRNKELEMSPSCSS--FEVLDPHDPVISRLATQLFKKTTDYLQAEMVAGQEH 64
+++ W RD + L SPS SS L P P S Q +K ++L A +++ ++
Sbjct: 300 EVDSWGRDHADNRLRRSPSRSSNFHHPLSP-SPDNSLENLQHMQKENEFLTARLLSMEDE 358
Query: 65 YMLLEE 70
+L+E
Sbjct: 359 TKMLKE 364
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 13 RDGRNKELEMSPSCSSFEVL---DPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLE 69
RD R K +C SF +L P++ L K Y + + GQE Y+LLE
Sbjct: 593 RDMRLKYAASFETCYSFRLLFYAGSFYPIMGALRMAYPNKYEIYRRVDEPNGQERYVLLE 652
Query: 70 E 70
E
Sbjct: 653 E 653
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 27.5 bits (58), Expect = 4.5
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 45 QLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYA-DLRSLAANLNKTLNEYNEMYAXX 103
Q KK + ++++ + +E Y LL++ R K+ D +L + L K E +
Sbjct: 91 QNMKKQKEAVESKQIKQEEGYKLLQQEQR----KWKRDKENLNSKLEKKTKETKDAKEEL 146
Query: 104 XXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEE 144
+K E N RLD K+L+ + K+L+E
Sbjct: 147 KITKREKEYLNTKLETKREENK-RLDEENKKLQRKIKDLQE 186
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 48 KKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNE 98
K+ TD + E+ A + Y ++NR A KY L SL L + N+ E
Sbjct: 630 KEETDRVNLEIEAAEREY----DLNRAAELKYGTLLSLQKQLEEAENKLME 676
>11_06_0356 -
22654329-22654571,22654695-22654898,22655065-22655319,
22655435-22655626,22655738-22656046,22656149-22656355,
22656450-22656527,22657493-22657747,22657850-22658000,
22658269-22658500,22658631-22658886,22658960-22659091
Length = 837
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 44 TQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSL 85
++LF+KT + ++V G YM E I + IT+ D+ SL
Sbjct: 188 SRLFEKTLSHHTTKVVIGTPGYMPPEYIEKKHITEMFDVFSL 229
>07_03_1549 -
27633229-27633340,27633418-27633509,27633601-27634270,
27634731-27634870,27634958-27635299
Length = 451
Score = 26.6 bits (56), Expect = 7.8
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 6 EDIEKWTRDGRNK----ELEMS-PSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEMVA 60
ED+ KWTR EL++ S SS E P I + K ++ E
Sbjct: 157 EDMIKWTRTLSMSTALCELQLELRSSSSTENFQSRTPPIRECKRKRSNKRNVRVKLETKF 216
Query: 61 GQEHYMLLEEINRLAITKYADLRSLAANLNKTLN 94
++ + LE+ N T +L SL ++ N+T N
Sbjct: 217 NEDKMVCLEDPNLATNTANENLFSLPSSANETGN 250
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 52 DYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEY 96
DYL E + G+ Y R+ T+ LRSL +N L Y
Sbjct: 282 DYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRY 326
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,633
Number of Sequences: 37544
Number of extensions: 92822
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 10
length of query: 145
length of database: 14,793,348
effective HSP length: 76
effective length of query: 69
effective length of database: 11,940,004
effective search space: 823860276
effective search space used: 823860276
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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