Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002101-TA|BGIBMGA002101-PA|undefined
(145 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY531265-1|AAT00461.1| 142|Homo sapiens biogenesis of lysosome-... 83 5e-16
BC020494-1|AAH20494.1| 99|Homo sapiens biogenesis of lysosome-... 76 4e-14
AY278457-1|AAQ19606.1| 99|Homo sapiens 11 kDa centrosome assoc... 76 4e-14
AL139819-1|CAH72821.1| 74|Homo sapiens novel protein protein. 55 1e-07
AL138921-1|CAH72396.1| 74|Homo sapiens novel protein protein. 55 1e-07
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein. 29 8.0
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot... 29 8.0
>AY531265-1|AAT00461.1| 142|Homo sapiens biogenesis of
lysosome-related organelles complex 1 subunit 2 protein.
Length = 142
Score = 82.6 bits (195), Expect = 5e-16
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 30 EVLDPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANL 89
E +P + I+ L +F K YL E+ A E Y LLE +N+L KY +++ +A N+
Sbjct: 28 EAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINI 87
Query: 90 NKTLNEYNEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEEK 145
++ L + N+ YA E QV+ E AY+LD+Y+K+L+A++K+LE++
Sbjct: 88 SRNLKDLNQKYAGLQPYLDQINVIEE-QVAALEQAAYKLDAYSKKLEAKYKKLEKR 142
>BC020494-1|AAH20494.1| 99|Homo sapiens biogenesis of
lysosome-related organelles complex-1, subunit 2
protein.
Length = 99
Score = 76.2 bits (179), Expect = 4e-14
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 46 LFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYAXXXX 105
+F K YL E+ A E Y LLE +N+L KY +++ +A N+++ L + N+ YA
Sbjct: 1 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 60
Query: 106 XXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEEK 145
E QV+ E AY+LD+Y+K+L+A++K+LE++
Sbjct: 61 YLDQINVIEE-QVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
>AY278457-1|AAQ19606.1| 99|Homo sapiens 11 kDa centrosome
associated protein protein.
Length = 99
Score = 76.2 bits (179), Expect = 4e-14
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 46 LFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYAXXXX 105
+F K YL E+ A E Y LLE +N+L KY +++ +A N+++ L + N+ YA
Sbjct: 1 MFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQP 60
Query: 106 XXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEEK 145
E QV+ E AY+LD+Y+K+L+A++K+LE++
Sbjct: 61 YLDQINVIEE-QVAALEQAAYKLDAYSKKLEAKYKKLEKR 99
>AL139819-1|CAH72821.1| 74|Homo sapiens novel protein protein.
Length = 74
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 71 INRLAITKYADLRSLAANLNKTLNEYNEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDS 130
+N+L KY +++ +A N+++ L + N+ YA E QV+ E AY+LD+
Sbjct: 1 MNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEE-QVAALEQAAYKLDA 59
Query: 131 YTKQLKARFKELEEK 145
Y+K+L+A++K+LE++
Sbjct: 60 YSKKLEAKYKKLEKR 74
>AL138921-1|CAH72396.1| 74|Homo sapiens novel protein protein.
Length = 74
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 71 INRLAITKYADLRSLAANLNKTLNEYNEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDS 130
+N+L KY +++ +A N+++ L + N+ YA E QV+ E AY+LD+
Sbjct: 1 MNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEE-QVAALEQAAYKLDA 59
Query: 131 YTKQLKARFKELEEK 145
Y+K+L+A++K+LE++
Sbjct: 60 YSKKLEAKYKKLEKR 74
>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
Length = 3259
Score = 28.7 bits (61), Expect = 8.0
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 43 ATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYAX 102
A QL + D ++ + V Q+ L+E + A K L+ A +LN+Y E
Sbjct: 57 AEQLVVELKDIIRQKDVQLQQKDEALQEERKAADNKIKKLKLHAKAKLTSLNKYIEEMKA 116
Query: 103 XXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEE 144
E Q+SK + ++ + +++K + +E EE
Sbjct: 117 QGGTVLPTEPQSEEQLSKHDKSSTEEEMEIEKIKHKLQEKEE 158
>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372
protein.
Length = 3225
Score = 28.7 bits (61), Expect = 8.0
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 43 ATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYAX 102
A QL + D ++ + V Q+ L+E + A K L+ A +LN+Y E
Sbjct: 18 AEQLVVELKDIIRQKDVQLQQKDEALQEERKAADNKIKKLKLHAKAKLTSLNKYIEEMKA 77
Query: 103 XXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEE 144
E Q+SK + ++ + +++K + +E EE
Sbjct: 78 QGGTVLPTEPQSEEQLSKHDKSSTEEEMEIEKIKHKLQEKEE 119
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.313 0.127 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,372
Number of Sequences: 224733
Number of extensions: 474027
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 73,234,838
effective HSP length: 83
effective length of query: 62
effective length of database: 54,581,999
effective search space: 3384083938
effective search space used: 3384083938
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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