GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002101-TA|BGIBMGA002101-PA|undefined
         (145 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-16|AAK95895.1|  132|Caenorhabditis elegans Hypothetical...    42   2e-04
U23523-2|AAC46559.2|  399|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical p...    27   5.3  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    26   9.2  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AC084197-16|AAK95895.1|  132|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.30 protein.
          Length = 132

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 37  PVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEY 96
           P I +LA  +  K   + Q ++    E Y LLE +N     +Y D++ +A  +   L+  
Sbjct: 23  PHIRQLADNMTDKVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDMKVVAEKVAGKLDNL 82

Query: 97  NEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEEK 145
           N+ Y              E    + E     L++Y  QL+++   ++++
Sbjct: 83  NQKYENLRPYLSQIDAMDE-STRRLEEATAVLENYVTQLESKLTNIQQQ 130


>U23523-2|AAC46559.2|  399|Caenorhabditis elegans Hypothetical
           protein F53A9.4 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 1   MSLSTEDIEKWTRDGRNKELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTD 52
           MS++ EDI++  +  R       PS  + EV  P+DP  S ++  +FK   D
Sbjct: 102 MSMTVEDIQEAAKHSRE-----DPSGETVEVRRPNDPRRSSVSLDVFKSFRD 148


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 44  TQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMY 100
           TQ+ K+  ++ Q E+   QE   + E  N+L     ++L++L   LN+T N+ ++++
Sbjct: 311 TQILKEQDEF-QDEI--RQEFLKIQENENKLIEKLMSELKTLKTELNETKNQISDLH 364


>Z49909-12|CAA90114.2|  121|Caenorhabditis elegans Hypothetical
           protein C14A4.10 protein.
          Length = 121

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 33  DPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRL------AITKYADLRSLA 86
           +P+D  +  L   +     +  Q  M  G+   M LE+I+ L        ++  DL S++
Sbjct: 45  EPYDKTLDTLEAIVLNYIKELCQLAMKVGKPDKMALEDIHYLIRRDPKKFSRVKDLLSMS 104

Query: 87  ANLNKTLNEYNEM 99
             L K   ++ +M
Sbjct: 105 EELKKARKQFEDM 117


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 30  EVLD-PHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINR 73
           E+L+ P  P I     ++ K T DYL+ + +  +EH   + E  R
Sbjct: 103 ELLEGPLKPFIVVSPDEIIKVTRDYLERKAIEQEEHQSAISEFFR 147


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 6   EDIEKWTRDGRNKELEMS-PSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEMVAGQEH 64
           E  ++   D RN   E++ P  ++      + PV    +  L +K  +  +A +V   EH
Sbjct: 249 EPTQRLLEDVRNDLEELNRPGHNADTFYAGNAPVSRSRSNTLDRKAAESAEAHVVHATEH 308

Query: 65  YMLLEEINRLAITKYADLRSLAANLNKTL 93
           + +   + +   TK+ +  SL + L+K L
Sbjct: 309 HTVHHVVKKSKFTKFKE--SLCSVLDKDL 335


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,371
Number of Sequences: 27539
Number of extensions: 90899
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 12,573,161
effective HSP length: 75
effective length of query: 70
effective length of database: 10,507,736
effective search space: 735541520
effective search space used: 735541520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)