GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002101-TA|BGIBMGA002101-PA|undefined
         (145 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49550.1 68418.m06132 expressed protein                             38   0.004
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    33   0.076
At4g32190.1 68417.m04581 centromeric protein-related low similar...    29   1.2  
At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi...    29   1.6  
At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.6  
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot...    27   6.6  
At1g24280.1 68414.m03064 glucose-6-phosphate 1-dehydrogenase, pu...    27   6.6  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    27   6.6  
At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (...    26   8.7  

>At5g49550.1 68418.m06132 expressed protein
          Length = 127

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 33  DPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADLRSLAANLNKT 92
           D  D +   L   LF   +  +++E+     H  LLE++N    ++Y D+  +AA L + 
Sbjct: 3   DSRDDLAESLQN-LFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGL-RV 60

Query: 93  LNEYNEMYAXXXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFK 140
             E  +  +             E QVS+FE     LD Y   L+++ +
Sbjct: 61  FAEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIR 108


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 33.1 bits (72), Expect = 0.076
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 5   TEDIEKWTRDGRNK-ELEM----SPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEMV 59
           T D +K +R+  N+ E E+           E  +    V+SRL  Q  K+  D +  E+ 
Sbjct: 506 TNDTDKASRERLNRIETELVLLKEKQAELTEQWEHERSVMSRL--QSIKEEIDRVNLEIQ 563

Query: 60  AGQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNE 98
             +  Y    ++NR A  KY  L SL   LN+   E NE
Sbjct: 564 QAEREY----DLNRAAELKYGSLNSLQRQLNEAEKELNE 598


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 1   MSLSTEDIEKWTRDGRNKELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEMVA 60
           ++L  E++EK  ++  N+  E+S + S FE       ++S+ A ++ K+    + A   A
Sbjct: 205 LTLKEEELEKMRQEIANRSKEVSMAISEFE---SKSQLLSK-ANEVVKRQEGEIYALQRA 260

Query: 61  GQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEY 96
            +E    LE        +   LR   ANL K   E+
Sbjct: 261 LEEKEEELEISKATKKLEQEKLRETEANLKKQTEEW 296


>At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding
            helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
          Length = 1179

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 12   TRDGRNKELEMSPSCSSFEVLDPHDPVISRLATQLFKKTTDYLQAEMVAGQE 63
            T D  +KE  ++    SF +  P D + S   T L + TTD+   ++  G+E
Sbjct: 1116 TNDAASKETRLTHK--SFFIQMPKDIISSAFGTSLLQVTTDFRPLKIAYGKE 1165


>At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to ACC oxidase, Lycopersicon
           esculentum [SP|P05116], gibberellin 3B-hydroxylase,
           Latuca sativa [gi:4164145]; contains Pfam domain
           PF03171, 2OG-Fe(II) oxygenase superfamily
          Length = 352

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 19  ELEMSPSCSSFEVL-DPHDPVISRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAIT 77
           + +  P   SF VL + +   I+R+A  LF+     L  E+   +    L E    + + 
Sbjct: 151 DAQEEPKLESFRVLMEEYGKHITRIAVSLFEAIAQTLNLELSGNRRSEYLSESTGLIRVY 210

Query: 78  KYADLRSLAA 87
           +Y      AA
Sbjct: 211 RYPQSSEEAA 220


>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
           contains Pfam domains, PF00439: Bromodomain and PF00249:
           Myb-like DNA-binding domain
          Length = 631

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 10  KWTRDGRNKELEMSPSCSSFEVL 32
           K + +GRN E E +PS SS+ +L
Sbjct: 583 KRSNNGRNSEREAAPSSSSYPIL 605


>At1g24280.1 68414.m03064 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative strong similarity to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain
          Length = 599

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/43 (23%), Positives = 24/43 (55%)

Query: 40  SRLATQLFKKTTDYLQAEMVAGQEHYMLLEEINRLAITKYADL 82
           S+ +  L K    YL+ + +   +HY+  E +  L++ ++++L
Sbjct: 262 SKTSAALTKSLKQYLEEDQIFRIDHYLGKELVENLSVLRFSNL 304


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 44  TQLFKKTTDYLQAEMVA-GQEHYMLLEEINRLAITKYADLRSLAANLNKTLNEYNEMYAX 102
           T  F+     L+AE     +E  + +E++ +   ++   LRS  ++L +  N+ NE+Y  
Sbjct: 505 TDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQS 564

Query: 103 XXXXXXXXXXXXEVQVSKFEVNAYRLDSYTKQLKARFKELEEK 145
                       +V  SK +    +++  +  L A    LE K
Sbjct: 565 TKNELVKLQAQLQVDKSKSDDMVSQIEKLS-ALVAEKSVLESK 606


>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
           (RPN10) identical to multiubiquitin chain binding
           protein (MBP1) SP:P55034, GI:1165206
          Length = 386

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 1   MSLSTEDIEKWTRDGRN---KELEMSPSCSSFEVLDPHDPVISRLATQL 46
           MS+S E+  + T  G N    +  +S   SS   +DP+DP +  L   L
Sbjct: 316 MSMSGEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAVKELLASL 364


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,876
Number of Sequences: 28952
Number of extensions: 83942
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 10
length of query: 145
length of database: 12,070,560
effective HSP length: 75
effective length of query: 70
effective length of database: 9,899,160
effective search space: 692941200
effective search space used: 692941200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)