GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   6.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 69  DSPALKKNSHSAPMRG 84
           D   L+  +HS PM+G
Sbjct: 136 DIAGLRNKTHSQPMQG 151


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 53  RKNSGRTRTWPSYAAEDSPALKKNSHSAPMRGEEIKTNIRCDTIQQEAIILI 104
           RK++  +    S    DS   K+NS        EIK    CD+ +    + +
Sbjct: 385 RKSTSSSTHTSSQQTSDSFLSKRNSEKKCGSLREIKEVSDCDSSESRKEVYV 436


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,668
Number of Sequences: 317
Number of extensions: 813
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 114,650
effective HSP length: 51
effective length of query: 84
effective length of database: 98,483
effective search space:  8272572
effective search space used:  8272572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)