GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   4.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   7.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/71 (21%), Positives = 33/71 (46%)

Query: 64  SYAAEDSPALKKNSHSAPMRGEEIKTNIRCDTIQQEAIILIVTISMLSDRPAATGQCALN 123
           ++ A  S    ++SH +P    + +   +   + ++    +V+ +  SD PA++ + A  
Sbjct: 275 THPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFVVSNTANSDEPASSSKPAKP 334

Query: 124 FGDLKQKFQVR 134
             DL + F  R
Sbjct: 335 LTDLNRAFSQR 345


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 66  AAEDSPALKKNSHSAPMRGEEIKTNIRCDTIQQEAIILIVTISMLSDRPAAT 117
           +A  +P+L  NS   P R  ++   ++     Q  I L+ TIS+ S+    T
Sbjct: 396 SAAANPSLTSNSGHIPYRESKLTRLLQQSLSGQSQISLLATISIESNHTMET 447


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 95  TIQQEAIILIVTISMLSDRPAATGQCALNFGDLKQKF 131
           +I QE ++ +VT ++  D PAA     +NF    +KF
Sbjct: 303 SIYQECLVGLVTKAVSLDTPAAVYLYLINFHREYRKF 339


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,038
Number of Sequences: 5004
Number of extensions: 16488
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 135
length of database: 2,362,478
effective HSP length: 66
effective length of query: 69
effective length of database: 2,032,214
effective search space: 140222766
effective search space used: 140222766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)