GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    30   0.55 
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    29   0.97 
02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591...    29   0.97 
06_03_0078 + 16291254-16291532,16291654-16291725                       29   1.7  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   3.0  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    27   5.2  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   6.8  
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    26   9.0  
02_04_0514 + 23579439-23580148,23580601-23580913                       26   9.0  

>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 33  PVVGAPLGT--KVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHS 79
           PV  +P  +  ++Q  +V PS RK++   +T P  +   SPA   N H+
Sbjct: 578 PVASSPSDSMHRMQQPSVAPSKRKSNSVPKTQPPVSGVGSPASVSNMHA 626


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 31  VQPVVGAPL--GTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHSAPMRGEE 86
           V P    PL    K++ +   P P  N+ +  T+PS  A  +P +  ++  AP RG++
Sbjct: 515 VSPNTSPPLLSSPKIKELHELPRPPANASKHTTFPSLVAHSAPLVPNSAPLAP-RGQD 571


>02_05_1050 -
           33757432-33757664,33757767-33758645,33758720-33759109,
           33759488-33759613,33760497-33760557
          Length = 562

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 29  PTVQPVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPAL---KKNSHSAPMRGE 85
           P  QP+V   +   ++  +V PS   ++ R+R   S AAEDSP +   KK +  +  +G+
Sbjct: 150 PLTQPIV---MSEDLKRASV-PSTNPSAKRSRVASSQAAEDSPTVHRGKKRNEESASKGD 205

Query: 86  EI 87
           ++
Sbjct: 206 QL 207


>06_03_0078 + 16291254-16291532,16291654-16291725
          Length = 116

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 41  TKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHSAPMRGEEIKTNIRCDTI 96
           T  ++ A  P P     R+R + ++A+   PA   +S +      +IK  +  DT+
Sbjct: 48  TTTRFAAWSPPPPSGGARSRGFAAWASAPGPAGSTDSPAMQALETKIKEQLEADTV 103


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 27  RLPTVQPVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHSAPMRGEE 86
           ++PT   + G+P GT   Y    P  +    R   W  +  E++PA+ + S   P   +E
Sbjct: 265 QMPTQMALPGSPHGTSAGYARRAPQ-KVAPSRVSVW--HRIEENPAMYEPSSPPPHMPKE 321

Query: 87  I 87
           +
Sbjct: 322 V 322


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 55  NSGRTRTWPSYAAEDSPALKKNSHSAP-MRGEEIKTNIRCDTIQQEAI 101
           NS    T  S  A+D PA    SHS P  R EE+        +  ++I
Sbjct: 572 NSAALSTCSSQDAQDVPASSSTSHSNPEARAEEVNDEFEKGEVVTQSI 619


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 33   PVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHSAPMR 83
            P   A +GT++Q VA+ P      G T ++P +  +     +     APM+
Sbjct: 1559 PNAAAMVGTQMQGVAMAPWGAIAQGNTNSYPGWGGQVGNMNQNVGWGAPMQ 1609


>06_02_0211 -
          13043968-13044646,13044752-13045037,13045903-13045979,
          13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 31 VQPVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAA 67
          +QP    P    +  + V PSPR+  G + ++P  AA
Sbjct: 48 LQPPPPPPARAPLSSLVVKPSPREGDGASSSYPDAAA 84


>02_04_0514 + 23579439-23580148,23580601-23580913
          Length = 340

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 50  PSPRKNSGRTRTWPSYAAEDSPALKKNSHSAPMRGEEIKTNIRCDTIQ 97
           P+ RK +G  R+W +   E +PA    +  A    E + T +  D +Q
Sbjct: 83  PAARKGAGGWRSWSNVEWEGAPAAMAPALKAARGDEGVDTKV-VDAVQ 129


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,393
Number of Sequences: 37544
Number of extensions: 117812
Number of successful extensions: 308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)