GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)                       28   3.0  
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              27   4.0  
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)               26   9.3  

>SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)
          Length = 456

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 49  CPSPRKNSGRTRTWPSYAA-EDSPALKKNSHSAPMRGEEIKTNIRCDTIQQEAI 101
           CP+P K+      + S+A   ++PA +K S   P +G EI        +++E +
Sbjct: 124 CPTPNKSD----VFASHADFSETPAFRKKSSWCPEKGREIAIEAYAKALEEEIL 173


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 38  PLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNS 77
           P G K QY  +     KN  R +  P  A   +P +KKNS
Sbjct: 487 PSGQKPQYHGIKYEKPKNRARFKAKPITANPYAPLIKKNS 526


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 73  LKKNSHSAPMRGEEIKTNIRCDTIQQEAIILIVTISMLSDRPAATGQCALNFGD--LKQK 130
           + K++   P  GEE+  + RC+    +     +  + +   P  T Q   +FG+  L Q+
Sbjct: 217 IPKSAKMKPDNGEEMALSSRCENSVSDLSKEHLIFNFIPTNPYVTMQKCTDFGNPRLDQR 276

Query: 131 FQV 133
           F+V
Sbjct: 277 FEV 279


>SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 31 VQPVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSHSA 80
          V+    AP     +  A  PSPR N+  + T    A+   P  +K  H+A
Sbjct: 39 VRSKASAPAKVHAEGAAPAPSPRMNAAHSMTAAGTASAPGPG-EKGDHTA 87


>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 722

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 25  YSRLPTVQPVVG-APLGTKVQYVAVCPSPRKNSGRTRT 61
           Y ++   Q V   AP G KV Y A CP  R+    T T
Sbjct: 313 YLKIAQTQTVTDTAPDGIKVDYTANCPDGRRVGENTCT 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,829
Number of Sequences: 59808
Number of extensions: 135988
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 16,821,457
effective HSP length: 75
effective length of query: 60
effective length of database: 12,335,857
effective search space: 740151420
effective search space used: 740151420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)