GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   2.7  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    22   6.2  

>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 41  TKVQYVAVCPSPRKNSGRTRTWP--SYAAEDSPALKKNSHS 79
           T++Q  A   S +KNS R   W   SYA   + A+   S S
Sbjct: 95  TQLQAAASSSSSKKNSSRRNAWGNLSYADLITQAISSASDS 135


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 25  YSRLPTVQPVVGAPLGTKVQYVAVCPSPRKNSGRTRTWPSYAAEDSPALKKNSH--SAPM 82
           YS+  T       P GT  + +   P+ ++ S      P     D+ A   N H    P 
Sbjct: 237 YSKKSTTVSYQPVPTGTPTRMLNGEPASQRPSSSQMQRPKVQQLDTAAAPTNHHLYRCPA 296

Query: 83  RGE---EIKT--NIRCDTIQQEAIILIVTISMLSDRPAATGQCALNFGDLKQKFQ 132
            G    E+    N  C     +  + + + S    +PA TG  A+      Q+FQ
Sbjct: 297 CGNLFVELTNFYNHSCTKAPAQDGVAVAS-SNNQSQPARTGGSAVTITSEGQRFQ 350


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,745
Number of Sequences: 2123
Number of extensions: 3769
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 516,269
effective HSP length: 58
effective length of query: 77
effective length of database: 393,135
effective search space: 30271395
effective search space used: 30271395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)