GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002100-TA|BGIBMGA002100-PA|undefined
         (135 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    30   0.66 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   6.1  

>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 51  SPRKNSGRTRTWPSYAAEDSPALKKNSHS 79
           SPR++  RTR+ PS    DSP  + NS S
Sbjct: 133 SPRRSRSRTRSPPSRDRRDSPDRRDNSRS 161


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 51  SPRKNSGRTRTWPSYAAEDSPALKKNS 77
           SPR    RTR  PSY  E+ P +KK S
Sbjct: 903 SPRSPDRRTRRSPSYEREE-PPVKKTS 928


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,923
Number of Sequences: 27539
Number of extensions: 99273
Number of successful extensions: 213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 12,573,161
effective HSP length: 74
effective length of query: 61
effective length of database: 10,535,275
effective search space: 642651775
effective search space used: 642651775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)