GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002099-TA|BGIBMGA002099-PA|IPR011032|GroES-like,
IPR002085|Alcohol dehydrogenase superfamily, zinc-containing,
IPR013154|Alcohol dehydrogenase GroES-like
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)                38   0.018
SB_22463| Best HMM Match : VWA (HMM E-Value=0)                         33   0.51 
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  

>SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)
          Length = 478

 Score = 37.5 bits (83), Expect = 0.018
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 276 GTTSRSLHRSLQCLAPEGVVLVTEDVGE-RLLSKFAKKAEDL---SVSVVVVPNGTIEQL 331
           G   R  HRS Q  APE V L++E  GE R  S  AK+ E L    V++VV         
Sbjct: 234 GLNKRRTHRSNQVSAPEYVFLISELAGERRFASVVAKRLESLVGIRVNLVVYLGQYGRAA 293

Query: 332 KELVSLVARGDIEP--PPHSVYPAEEAAEVVRKL 363
            E V     G  +P  PP S Y      +V R L
Sbjct: 294 LETVLKAVLGQAQPMVPPPSSYKGNFFQDVRRAL 327


>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1865

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 255 KQLIERTTDACGGP-VDVVLNFGTTSR-SLHRSLQCLAPEGVVLVTEDV---GERLLSKF 309
           K+L++      GG   DV L    T   SL   ++   P+  ++VT      G   L+K 
Sbjct: 738 KELVDGIASTPGGRRTDVALRQVKTDLFSLEGGMRQGHPKYAIVVTSGATAAGSEDLAKA 797

Query: 310 AKKAEDLSVSVVVVPNGTIEQLKELVSLVARGDIEPPPHSVYPAEEAAEVVRKLCNSE 367
           +K   +L V VVVV   +     +   L +  ++   P     ++ A  + +KLCN++
Sbjct: 798 SKDLRELGVKVVVVAANSGADDSDFAKLASDPELVFKPDGGQLSDLAVSMTKKLCNAK 855


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 115 LKEGARIVLYPYEGVPHGYAEYIVVPD 141
           L  GA + LYPY+  P G + Y   PD
Sbjct: 232 LHSGALVALYPYDDSPSGQSLYSATPD 258


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 276 GTTSRSLHRSLQCLAPEGVVLVTEDVGERLLSKFAKKAEDLSVSVVVVPNGTIEQLKELV 335
           GTTS SL+ ++   A      ++  + E   S +   A + + ++   PNGT   + E +
Sbjct: 602 GTTS-SLYETIDVNATP---TISPSLNETTSSAYETIAVNATPTISPSPNGTTSSVYETI 657

Query: 336 SLVARGDIEPPPH 348
            L A   I P PH
Sbjct: 658 DLNATPTISPSPH 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,591
Number of Sequences: 59808
Number of extensions: 468844
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 11
length of query: 380
length of database: 16,821,457
effective HSP length: 83
effective length of query: 297
effective length of database: 11,857,393
effective search space: 3521645721
effective search space used: 3521645721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)