GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002099-TA|BGIBMGA002099-PA|IPR011032|GroES-like,
IPR002085|Alcohol dehydrogenase superfamily, zinc-containing,
IPR013154|Alcohol dehydrogenase GroES-like
         (380 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 190 KTTVLIVGTGGLALWALRLATYYFKREEYNDRISIAVATLKDEGFLLAKECEEVNVVQW 248
           KTTV  +    L L    ++    + + Y   I   V   K++GFL        NV+++
Sbjct: 25  KTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRY 83


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 190 KTTVLIVGTGGLALWALRLATYYFKREEYNDRISIAVATLKDEGFLLAKECEEVNVVQW 248
           KTTV  +    L L    ++    + + Y   I   V   K++GFL        NV+++
Sbjct: 25  KTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRY 83


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 6/29 (20%)

Query: 86  GIRDGALFPGYEVAGIIDAIGKAAERTDE 114
           G   GALFPG      + A GK A R+D+
Sbjct: 65  GTAGGALFPG------MAAAGKGAARSDD 87


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,721
Number of Sequences: 429
Number of extensions: 4042
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 380
length of database: 140,377
effective HSP length: 59
effective length of query: 321
effective length of database: 115,066
effective search space: 36936186
effective search space used: 36936186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)