Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002098-TA|BGIBMGA002098-PA|IPR003347|Transcription
factor jumonji/aspartyl beta-hydroxylase, IPR013129|Transcription
factor jumonji
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 158 5e-39
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 138 8e-33
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 137 1e-32
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 117 2e-26
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 99 3e-21
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 99 6e-21
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 76 4e-14
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 62 8e-10
11_06_0541 + 24771145-24775479 31 1.3
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 29 5.3
06_03_0520 - 21700971-21701288,21703077-21703271,21703368-217035... 29 7.1
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 29 7.1
05_03_0632 - 16404169-16405043,16405248-16405983,16406113-164065... 28 9.3
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842... 28 9.3
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 158 bits (384), Expect = 5e-39
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 13/262 (4%)
Query: 12 PTLENVEKDYWRVVLLGTDHVCVN-SASIDTGNDGYGFSK-----NKNDAFGKHPWNLKM 65
P+++ +E +YWR+V+ TD V V+ A +DT GFSK N+ D +G WNL
Sbjct: 219 PSVDEIEGEYWRIVVCPTDEVEVDYGADLDTSMFSSGFSKLSSDSNRRDPYGLSCWNLNN 278
Query: 66 LSQNPGNVLR-SLGSVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIP 124
L + PG+VL + GV VP L++GM FS+ CWH + H L + YMH G K+WYG+P
Sbjct: 279 LPRIPGSVLSFETEDISGVVVPWLYVGMCFSSFCWHVEDHFLYSMNYMHFGEPKVWYGVP 338
Query: 125 NDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFP 184
+ +A+ P + + L + + PS+L+ V + RVVQNPGEF++ P
Sbjct: 339 GADAVKLEEAMRKNLPRLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNPGEFVLTLP 398
Query: 185 KAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKDSRSS 244
+AY GF +E+V A WL + RE T S + LL+ A ++
Sbjct: 399 RAYHSGFNCGFNCAEAVNVAPVDWLPHGQCAVELYREQRRKTSISHDKLLLKTANEA--- 455
Query: 245 LRILQRVYSNLSPIVRDELEYR 266
+++++ NLS ++ YR
Sbjct: 456 ---VRQLWMNLSDCKSEQGVYR 474
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 138 bits (333), Expect = 8e-33
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 29/259 (11%)
Query: 12 PTLENVEKDYWRVVLLGTDHV---------------------CVNSASIDTGNDGYGFSK 50
P++E++E +YWR+V + T+ + + A ++TG G GF K
Sbjct: 278 PSVEDIEGEYWRIVEVPTEEIEDSFRTTTVVFPYLSEDVIYYVIYGADLETGTFGSGFPK 337
Query: 51 ----NKNDAFGKHP---WNLKMLSQNPGNVLR-SLGSVLGVTVPTLHLGMVFSTSCWHRD 102
K+DA K+ WNL L + G+VL G + GV VP +++GM FS+ CWH +
Sbjct: 338 LSPETKSDAEDKYAQSGWNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVE 397
Query: 103 PHGLPWVEYMHTGPGKIWYGIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLL 162
H L + YMH G K+WYG+P + N A+ P + + L + + PSLL
Sbjct: 398 DHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDLLHNLVTQFSPSLL 457
Query: 163 REHNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRES 222
+ V + R VQ+ GEF++ FP+AY GF +E+V A WL H+ + RE
Sbjct: 458 KSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQ 517
Query: 223 CEPTMFSLEHLLVSIAKDS 241
S + LL+ A+++
Sbjct: 518 ARKITISHDKLLLGAAREA 536
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 137 bits (331), Expect = 1e-32
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 17 VEKDYWRVVLLGTDHVCVNSASIDTGNDGYGFSKNKNDAFGKHPWNLKMLSQNPGNVLRS 76
+E+++W + G + S DG FS + ND G WNLK LS+ P + LR
Sbjct: 168 MEEEFWHEIAFGK----MQSVEYACDIDGSAFSSSPNDQLGTSKWNLKRLSRLPKSTLRL 223
Query: 77 LGSVL-GVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIPNDQSDNFRKAV 135
L + + G+T P L++GM+FS WH + H L + Y H G K WYGIP + +F K V
Sbjct: 224 LRAAIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGKAAPDFEKVV 283
Query: 136 ETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIATGF 195
C + L M PP++L H+V + R +Q PGEF+I FP+AY + GF
Sbjct: 284 ---CEGENAAFDVIL-GKTTMFPPNILLRHHVPVYRAIQKPGEFVITFPRAYHSGFSHGF 339
Query: 196 TISESVYFATNSW 208
E+V FA W
Sbjct: 340 NCGEAVNFAIGEW 352
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 117 bits (281), Expect = 2e-26
Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 17 VEKDYWRVVLLGTDHVCVNSASIDTGNDGYGFSKNKNDAFGKHPWNLKMLSQNPGNVLRS 76
VE+++WR + G + +D G FS + +D GK WNLK S+ +VLR
Sbjct: 387 VEEEFWREIAFGKMDFVEYACDVD----GSAFSSSPHDQLGKSNWNLKNFSRLSNSVLRL 442
Query: 77 LGSVL-GVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIPNDQSDNFRKAV 135
L + + GVT P L++GM+FS WH + H L + Y H G K WYGIP D + F K
Sbjct: 443 LQTPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAFKTWYGIPGDAAPGFEKVA 502
Query: 136 -------ETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAY 187
+ L L M PP++L +HNV + + VQ PGEF+I FP++Y
Sbjct: 503 SQFVYNKDILVGEGEDAAFDVLLGKTTMFPPNVLLDHNVPVYKAVQKPGEFVITFPRSY 561
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 99 bits (238), Expect = 3e-21
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 38 SIDTGND--GYGFSK--------NKNDAFGKHPWNLKMLSQNPGNVLRSLG-SVLGVTVP 86
S++ GND G GF+ N D G+ WN+++ + G++LR++ V GVT P
Sbjct: 157 SVEYGNDMPGSGFASPDELPDAANATDV-GETEWNMRVAPRARGSLLRAMARDVAGVTTP 215
Query: 87 TLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIPNDQSDNFRKAVETLCPTSCQN- 145
L++ M++S WH + H L + ++H G K WYG+P D F + V N
Sbjct: 216 MLYVAMLYSWFAWHVEDHELHSLNFLHFGKAKTWYGVPRDAMLAFEETVRVHGYADDLNA 275
Query: 146 ---KSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVY 202
L ++ P +L V R+VQ GEF+I FP AY + GF E+
Sbjct: 276 IRVAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASN 335
Query: 203 FATNSWLETVHH-VFQELRESCEPTMFSLEHLLVSIAKDSR 242
AT WL+ + +C P M S LL +A R
Sbjct: 336 IATPHWLQVAKEAAIRRASTNCGP-MVSHYQLLYELALSLR 375
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 98.7 bits (235), Expect = 6e-21
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 48 FSKNKNDAFGKHPWNLKMLSQNPGNVLRSL-GSVLGVTVPTLHLGMVFSTSCWHRDPHGL 106
+ K+ PWNL+ +++ PG++ R + V GVT P +++GM+FS WH + H L
Sbjct: 222 WEKSSGWRLSNSPWNLQAIARAPGSLTRFMPDDVPGVTSPMVYIGMLFSWFAWHVEDHDL 281
Query: 107 PWVEYMHTGPGKIWYGIPNDQSDNFRKAVETL---CPTSCQNKSIWLPSDIAMIPPSLLR 163
+ ++HTG K WY +P D++ + + T L ++ P +L
Sbjct: 282 HSLNFLHTGAPKTWYAVPGDRAVELEEVIRVHGYGGNTDRIASLAVLGEKTTLMSPEVLI 341
Query: 164 EHNVSLSRVVQNPGEFIIVFPKAYSCSIA-TGFTISESVYFATNSWLETVHH 214
++ V R+VQ PGEF++ FP+AY + G I+ V + SW ET H+
Sbjct: 342 DNGVPCCRLVQYPGEFVVTFPRAYHVGFSHEGLRITAKVKLSWCSW-ETPHY 392
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 76.2 bits (179), Expect = 4e-14
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 57 GKHPWNLKMLSQNPGNVLRSLGS-VLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTG 115
G+ WN++ ++++PG++LR + V GVT P L++GM+FS WH + H L + YMH G
Sbjct: 200 GETAWNMRGVARSPGSLLRFMPEDVPGVTTPMLYVGMMFSWFAWHVEDHDLHSLNYMHLG 259
Query: 116 PGKIWYGIPNDQSDNFRKAV 135
K WYG+P D + F V
Sbjct: 260 AAKTWYGVPRDAALAFEDVV 279
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 61.7 bits (143), Expect = 8e-10
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 12 PTLENVEKDYWRVV--LLGTDHVCVNSASIDTGNDGYGFSK------NKNDAFGKH---- 59
P+ VEK +W +V +G V S +DT G GF + + D H
Sbjct: 342 PSRVQVEKQFWEIVEGKVGELEVMYGS-DLDTSIYGSGFPRLCDPVPSSVDPVMWHKYCS 400
Query: 60 -PWNLKMLSQNPGNVLRSLGSVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGK 118
PWNL PG+VL+++ + + + H V S S +H + MH G K
Sbjct: 401 SPWNLNNFPNLPGSVLQTVRDNIAGHLMSNHRAAV-SASLFHLHSYS------MHVGEPK 453
Query: 119 IWYGIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPG 177
WYG+P +++ F K + P + L + M+ PS+L+ + V + V+Q PG
Sbjct: 454 CWYGVPGAEANAFEKVMRNALPDLFDAQPDLLFHLVTMLSPSILQANGVPVYSVIQEPG 512
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 249 QRVYSNLSPIVRDELEYRNALLMRGVKLAEDDVVGITNKRSAVCILHALRLLESVKYG 306
+RV+ N+ I R + N L RGV D ++G+TNK+ +CIL L+ L+ ++YG
Sbjct: 333 KRVFQNVVQIGRMVTQRLNGELERGV----DAMLGLTNKK-PLCIL--LKALDYLEYG 383
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 29.1 bits (62), Expect = 5.3
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 162 LREHNVSLSRVVQNPGEFIIVF-PKAYSCSIATGFTISESVYFATNSWLE-TVHHVFQEL 219
LR HN L+ + I P Y+ + + E Y W E T+ H L
Sbjct: 611 LRMHNFKLAEQFFTQAKSICPSDPLIYNEMGVVAYNMKE--YQKAVQWFELTLEHTSSSL 668
Query: 220 RESCEPTMFSLEHLLVSIAK 239
E EPT+ +L H L + K
Sbjct: 669 NEMWEPTLVNLGHALRKLKK 688
>06_03_0520 -
21700971-21701288,21703077-21703271,21703368-21703538,
21704483-21704737,21704821-21704961,21705118-21705165
Length = 375
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 215 VFQELRESCEPTMFSLEHLLVSIAKDSRSSLRILQRVYSNLSPIVRDE 262
V++ L E+ + T+ + E + +AK+ R ++R+Y + + DE
Sbjct: 172 VWEALIEAADTTLVTTEWAMYELAKNPDKQARNIERLYQEIREVCGDE 219
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 216 FQELRESCEPTMFS-LEHLLVSIAKDSRSSLRILQRVYSNLSPIVRDELE 264
FQ+ R+ P ++ L+ + + + ILQ Y+ L+P+ RD L+
Sbjct: 14 FQQTRDESIPEVWERLQEYVAACPRHGMDDWLILQNFYNGLTPMSRDHLD 63
>05_03_0632 -
16404169-16405043,16405248-16405983,16406113-16406512,
16406717-16406727
Length = 673
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 191 IATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFS-LEHLLVSIAKDSRSSLRILQ 249
I + +TI E + L FQ+ R+ P + L+ + + ILQ
Sbjct: 129 ICSTYTIKEFFPMGKTNALRGRISSFQQTRDESIPEAWERLQEYVAACPHHKMDDWLILQ 188
Query: 250 RVYSNLSPIVRDELE 264
Y+ L+P+ RD L+
Sbjct: 189 NFYNGLTPMSRDHLD 203
>01_07_0297 -
42583439-42583697,42583763-42583953,42583995-42584201,
42584291-42584362,42584472-42584507
Length = 254
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 145 NKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPG 177
NK++W P D M P EH + R++Q G
Sbjct: 165 NKNMWFPVDAGMFP-----EHKYEIVRIIQREG 192
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,473
Number of Sequences: 37544
Number of extensions: 456837
Number of successful extensions: 908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 20
length of query: 338
length of database: 14,793,348
effective HSP length: 82
effective length of query: 256
effective length of database: 11,714,740
effective search space: 2998973440
effective search space used: 2998973440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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