GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002098-TA|BGIBMGA002098-PA|IPR003347|Transcription
factor jumonji/aspartyl beta-hydroxylase, IPR013129|Transcription
factor jumonji
         (338 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...   113   2e-25
AL110490-11|CAB54451.1|  894|Caenorhabditis elegans Hypothetical...    82   6e-16
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    31   0.88 
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    31   1.5  
U80839-7|AAB37915.1|  306|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z92815-3|CAB07291.1|  307|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z81524-8|CAB04251.2|  182|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z81050-14|CAD54128.1|  182|Caenorhabditis elegans Hypothetical p...    29   6.2  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
           protein ZK593.4 protein.
          Length = 1477

 Score =  113 bits (271), Expect = 2e-25
 Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 12/235 (5%)

Query: 17  VEKDYWRVVLLGTDHVCVN-SASIDTGNDGYGFSKNKN----------DAFGKHPWNLKM 65
           VE+ +W+ V+   + V V   A + T   G GF + ++            +  H WNL  
Sbjct: 419 VERSFWKNVISHENPVSVKYGADLITSRVGSGFPRKEDKHTGPDLKLKQQYASHAWNLNN 478

Query: 66  LSQNPGNVLRSLGS-VLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKIWYGIP 124
           +     +VL    + + G+ VP +++GM FST CWH + H    V Y H G  KIWYG+ 
Sbjct: 479 MPVLRESVLSHFNTGISGMMVPWVYVGMCFSTFCWHTEDHWTYSVNYNHFGERKIWYGVG 538

Query: 125 NDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFP 184
            + ++ F  A++ + P     +            P LLR   V +  V QN GEF+I FP
Sbjct: 539 GEDAEKFEDALKKIAPGLTGRQRDLFHHMTTAANPHLLRSLGVPIHSVHQNAGEFVITFP 598

Query: 185 KAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAK 239
           +AY      G   +E+V FA   WL       +         +FS + LL  + +
Sbjct: 599 RAYHAGFNEGLNFAEAVNFAPIDWLSKGRECVESYSNVRRYLVFSHDELLFKMVE 653


>AL110490-11|CAB54451.1|  894|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 894

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 61  WNLKMLSQNPGNVLRSLG-SVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGKI 119
           WN+  L    G +L      + GV    L+ GM  +T  WH +   L  + ++H G  K 
Sbjct: 229 WNMNRL----GTILEDTNYEIKGVNTVYLYFGMYKTTFPWHAEDMDLYSINFLHFGAPKY 284

Query: 120 WYGIPNDQSDNFRKAVETLCPTSCQNK-----SIWLPSDIAMIPPSLLREHNVSLSRVVQ 174
           W+ I ++ +D F + +      S QN+       +L     ++ P LLR+  +  + +VQ
Sbjct: 285 WFAISSEHADRFERFMSQ--QFSYQNEYAPQCKAFLRHKTYLVTPELLRQAGIPYATMVQ 342

Query: 175 NPGEFIIVFPKAYSCSIATGFTISESVYFATNSWLE 210
            P EFII FP+ Y      G+ ++ES  FA+  W++
Sbjct: 343 RPNEFIITFPRGYHMGFNLGYNLAESTNFASQRWID 378


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 147 SIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKAYSCSIATGFTISESVYFATN 206
           S WL   I +IP      HN SL     + G F+   P+     +    T+S   +  ++
Sbjct: 139 SEWLAPTIVLIPLFYTGNHNFSLI-AAPSGGLFLRASPEFIKLDVLQDLTLSIFCFLVSS 197

Query: 207 -SWLETVHHVFQELRESCEPTMFSL 230
             +L T  H+ Q L ++   T FS+
Sbjct: 198 FLYLITFVHLVQTLPKTMSNTFFSI 222


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 71  GNVLR-SLGSVLGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHTGPGK-IWYGIPNDQS 128
           GN+L  +  S+ G+  P ++     + +  H +   L  +   H GPG  +WYG+P + S
Sbjct: 594 GNLLNFAQESLAGLNKPQVYCKPPGARTTAHLENQALGSININH-GPGDCVWYGVPMEYS 652

Query: 129 DNFRKAVETLCPTSCQN--KSIWLPSDIAMIPPSLLREHNVSLSRVVQNPGEFIIVFPKA 186
                 +E L      N  KS + PS+        LR   +   + +Q PG+ + V    
Sbjct: 653 GR----MEVLIKKHRLNVYKSGYWPSE------QELRNEKIPSQKFLQKPGDMVYVGIGT 702

Query: 187 YSCSIATGFTISES--VYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIAKD 240
           +    +  F I+ S  V   T + L     +      S   T+  +E ++  +A+D
Sbjct: 703 FHWVQSNDFAINVSWNVAQPTFNQLAAAMVIHDHNISSKATTLMPIEPIVWKMAED 758


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 10/166 (6%)

Query: 124 PNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIP---PSLLREHNVSLSRVV--QNPGE 178
           P++ S+  R+  +      CQN  I   S   M P   P LL      L  ++  ++  +
Sbjct: 123 PSEASEVMRRLSDVRYSRFCQNGQISKESIQKMFPTISPILLINFLAGLGFIICRKDYNK 182

Query: 179 FIIVFPKAYSCSIATGFTISESVYFATNSWLETVHHVFQELRESCEPTMFSLEHLLVSIA 238
             + F K Y  S   G + SE+     NS  +       EL  S E         ++  +
Sbjct: 183 KSVNFEKKYQGSDVRGVSKSEANEIL-NSLKQNSIRFLDELEFSAE---IVTNARMLDPS 238

Query: 239 KDSRSSLRILQRVYSNLSPIVRDELEYRNALLMRGVKLAEDDVVGI 284
             S     I  ++ SNL    R    +R++L + G+K + DDV+ I
Sbjct: 239 TQSTVQCHICDKI-SNLKNFTRHMQIHRDSLEILGIKYSLDDVIEI 283


>U80839-7|AAB37915.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC204.9 protein.
          Length = 306

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 188 SCSIATGFTISESVYFATNSWLETVHHVF 216
           S SIAT FT+ +   F    WLE + HVF
Sbjct: 90  SDSIATKFTMPKIPGFTVKKWLEHISHVF 118


>Z92815-3|CAB07291.1|  307|Caenorhabditis elegans Hypothetical
           protein W01F3.2 protein.
          Length = 307

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)

Query: 117 GKIWYGIPNDQSDNFRKAVETLCPTSCQNKSIWLPSDIAMIPPSLLREHNVSLSRVVQNP 176
           G+  YG   D SDN++  ++++ P         LPS I   P + +R HN     ++ N 
Sbjct: 185 GRSVYGYKKDGSDNWK--LQSVFPKE-------LPSSIGFTPEAAVRWHN-KHQLLLSNG 234

Query: 177 GEFIIVFPKAYSCSIATGFTIS 198
           G+F + + + ++ S+ TG T S
Sbjct: 235 GKFAL-YDEYWNKSLMTGRTES 255


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 3   LHFPPNGDPPTLENVEKDY----WRVVLLGTDHVCVNSASIDTGNDGYGFSKNKNDAFGK 58
           + FP NG   T + +   Y    W +V+   D   V S   D     Y   KN ++ F  
Sbjct: 61  ISFPNNGTYITFDQILSPYSLMMWYMVVKSMDTPTVGSEFFDEATREYATKKNNSEKFSF 120

Query: 59  HPWNLKMLSQNPGNV 73
              NL+ L+    NV
Sbjct: 121 ALENLENLNLTLTNV 135


>Z81524-8|CAB04251.2|  182|Caenorhabditis elegans Hypothetical
           protein F32H5.2 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 277 AEDDVVGITNKRSAVCILHALRLLESVKYGNKDP--SNYEMVLNFSDKDLNEL 327
           ++DD+  I   RS  C+L ALR +  +  GN     +N  ++ N    DL +L
Sbjct: 79  SQDDMPIIPLDRSKECVLQALRKMSQISKGNCSQLHNNVNLLENCYASDLQKL 131


>Z81050-14|CAD54128.1|  182|Caenorhabditis elegans Hypothetical
           protein F32H5.2 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 277 AEDDVVGITNKRSAVCILHALRLLESVKYGNKDP--SNYEMVLNFSDKDLNEL 327
           ++DD+  I   RS  C+L ALR +  +  GN     +N  ++ N    DL +L
Sbjct: 79  SQDDMPIIPLDRSKECVLQALRKMSQISKGNCSQLHNNVNLLENCYASDLQKL 131


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/83 (28%), Positives = 35/83 (42%)

Query: 209  LETVHHVFQELRESCEPTMFSLEHLLVSIAKDSRSSLRILQRVYSNLSPIVRDELEYRNA 268
            LE   ++  E  E  +   F L   L ++A D     R L   YS LS  VR +    + 
Sbjct: 1175 LEKYKNLLTEKYEKSKSNYFLLIEQLFTLANDPTLHWRPLDMAYSMLSMQVRRDCPLPDN 1234

Query: 269  LLMRGVKLAEDDVVGITNKRSAV 291
            ++   V+L  +D V      SAV
Sbjct: 1235 VVKMFVRLLINDTVKTRRIASAV 1257


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 237 IAKDSRSSLRIL-QRVYSNLSPIVRDEL 263
           IA D   SLR+L Q VYSNLS   R EL
Sbjct: 178 IAHDRLESLRLLKQDVYSNLSESARKEL 205


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,151
Number of Sequences: 27539
Number of extensions: 401124
Number of successful extensions: 798
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 13
length of query: 338
length of database: 12,573,161
effective HSP length: 82
effective length of query: 256
effective length of database: 10,314,963
effective search space: 2640630528
effective search space used: 2640630528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)